WDRR: WD40 Repeat Recognition
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| JobID: BUQP11659515065 Submitted: 2022-08-03 16:24:25 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79734761 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G031590 (Len=1377) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G031590, Len=1377): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAGKEEQSDWHLHSGQYLGEISALCFLHLPPQISSFPILLAGSGSEVMAYNLESGKMLESFRVFEGIRVHGISSISLNFN 80
WD40-rpts (_______________________WD 1______________________) (___________________
Query 81 EASSFTKLDFILVVFGEKRVKLYRISVEVIAEVCVNMVLLCSLPRFNHWVLDACFLKSRDSSSLAGSDNCGYIAIGCGDN 160
WD40-rpts WD 2___________________) (____________________WD 3______________
Query 161 SVHVWDTCESRMILKVESPERCLLYSMRLWGDDIDTIRVASGTIFNEIIVWEVVPSKGNKKNLDEKSHKTHDIQFHHMQY 240
WD40-rpts _____) (___________________WD 4__________________)
Query 241 EAVHKSRLVAHEGSIFRIAWSSDGFKLVSVSDDRSARIWSLNAKGSDADNPGEVIVLFGHNARVWDCCIYDSLIITASED 320
WD40-rpts (_________________WD 5________________) (________________WD 6_________
Query 321 CTCRAWGIDGQQLEMIKEHIGRGVWRCLYDPISNLLITAGFDSSIKVHRLNTSLSGTSNEPAENADRSMKREVFTTCIPD 400
WD40-rpts ______) (_________________WD 7________________)(________________WD 8__________
Query 401 SLDHNRHMDSKSEYVRCLRFSSERTIYVATNHGYLYHATLSDSMGVMWTKLIHVGEEVQIICMDLLACSPFEVSGGAEDW 480
WD40-rpts ______) (_________________WD 9________________)_______________WD10____________
Query 481 IALGDSQGRMTVLKVLHDSNAHTPDISFTWSAEKERQLLGTFWCKSLGFRYIFTADPRGALKLWRLADHVSASQNGKNYN 560
WD40-rpts ____) (______________________WD11_____________________) (______
Query 561 PSLVAEYISCFGLRIMCLDVSCEEEIVVCGDVRGNLILFPLSKDLLLETPITTGVKIIPTCYFKGAHGISTVTSVVVARL 640
WD40-rpts _______________WD12____________________) (_________________WD13_______________
Query 641 ESCQTELHSTGADGCICHIEYVKVNDRKVLEFIGMKQVKALTSVQSLFYDQTSLDLTSNLYATGFASADFIIWNLTTEAK 720
WD40-rpts _) (_________________WD14_________________)
Query 721 VLQIQCGGWRRPYSNYLGDIPELKNCFAYVKDETIYIHRHWVSGSERKVFPQNLHVQFHGRELHSLCFVPEADNKLGISS 800
WD40-rpts (_________________WD1
Query 801 RSCWIVTGCEDGTVRMTRYTRGINSWPASNLLGEHVGGSAVRSLCYISNVHLISSNGTITPDAKDTQESDLDDREDPVLL 880
WD40-rpts 5________________) (_________________WD16___
Query 881 ISAGAKRVLTSWLQKHRKLEKIANACLHHNAKGSCEPSGFPTSISFKWLSTDMPTKNSTSRRNSFNTMQDEATTGSSINP 960
WD40-rpts ______________) (___________________WD17__________________)
Query 961 DAESKSLQEKEELSLKSCSVEKYEDDWRYMAVTGFLVKHFNSRFTVCFIVVACSDATLSLRALILPHRLWFDVASLVPVG 1040
WD40-rpts (______
Query 1041 SPVLTLQHIVFPKFHSDGGGETLLGNVYIVISGATDGSIAFWDLTGNIEAFMKRLSSLRQEKFIDFQKRPRTGRGSQGGR 1120
WD40-rpts ________________WD18______________________) (_____________WD19______
Query 1121 RRTSLSTVTKSRSSKKMVIKKDEDDTNSSIQNQVPCESSSKVNISEANAAGSQPDCSTSSELILSTSNYSSEMCDIQPIH 1200
WD40-rpts _______) (_________________WD20________________)
Query 1201 VVTNAHQSGVNCLHVAAVNSSECVNNCYLYHVISGGDDQALQCLTFDLSLLSENTSSEKMESESECAKFIFHSEDHNHKY 1280
WD40-rpts (_____________________WD21____________________
Query 1281 LARFLRPHKIESAHSSAIKGVWTDGIWVFSTGLDQRIRCWKLEAQGKLVEYAYSIITVPEPEAIDARACDRNHYQIAVAG 1360
WD40-rpts ) (_______________WD22_______________)
Query 1361 RGMQIIEFSTSCDFCRR 1377
WD40-rpts
 22 WD40-repeats found in QUERY=CsaV3_3G031590 (Len=1377): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-51 3.52 260.04 0.01932 5.0% 17.35 WD 2: Seg 5 61-104 4.94 318.78 0.00314 10.0% 42.21 WD 3: Seg 11 122-166 7.02 404.77 0.00022 20.0% 53.06 WD 4: Seg 15 170-212 6.46 381.57 0.00045 17.5% 53.82 WD 5: Seg 20 242-280 8.92 483.11 1.9e-05 27.5% 53.88 WD 6: Seg 24 291-327 6.20 370.81 0.00063 22.5% 50.88 WD 7: Seg 28 331-369 6.92 400.70 0.00025 20.0% 57.49 WD 8: Seg 32 370-407 4.85 315.02 0.00353 7.5% 36.36 WD 9: Seg 35 411-449 6.57 386.14 0.00039 12.5% 48.76 WD10: Seg 38 447-485 6.88 398.73 0.00026 15.0% 50.06 WD11: Seg 43 497-545 5.78 353.37 0.00108 15.0% 36.21 WD12: Seg 48 554-600 6.85 397.67 0.00027 12.5% 55.45 WD13: Seg 52 604-642 5.29 333.07 0.00202 5.0% 17.53 WD14: Seg 57 675-714 8.26 456.04 4.4e-05 10.0% 50.34 WD15: Seg 65 780-818 6.92 400.33 0.00025 25.0% 36.80 WD16: Seg 70 856-895 5.87 357.03 0.00096 15.0% 14.89 WD17: Seg 72 904-946 4.00 280.03 0.01044 12.5% -3.37 WD18: Seg 76 1034-1083 5.73 351.50 0.00114 20.0% 28.15 WD19: Seg 79 1097-1128 4.45 298.42 0.00591 12.5% 13.63 WD20: Seg 81 1157-1195 4.77 311.83 0.00390 7.5% -2.43 WD21: Seg 84 1235-1281 3.00 238.74 0.03710 10.0% 3.21 WD22: Seg 86 1286-1321 5.19 329.09 0.00228 25.0% 29.13Multiple sequence alignment of 22 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-51 MAG-------K----------EEQSDWHLH---------SGQY---LG----EISALCFLHLP------P--QISSFPILLAGSGSEVMAY--N WD 2 61-104 -FR-------V----------FE------G---------IRVH---GI----SSISLNFNEAS-SFTKLD--FILVV-----FGEKRVKLY--R WD 3 122-166 SLP--RFNHWV----------LD------A---------CFLK---SR----DSSSLAGSDNC------G--YIAIG-----CGDNSVHVW--D WD 4 170-212 -SR-------M----------IL------K---------VESP---ERCLLYSMRLWGDDIDT------I--RVASG-----TIFNEIIVW--E WD 5 242-280 -AV-------H----------KS------R---------LVAH---EG----SIFRIAWSSDG------F--KLVSV-----SDDRSARIW--S WD 6 291-327 -PG-------E----------VI------V---------LFGH---NA----RVWDCCIYDS----------LIITA-----SEDCTCRAW--G WD 7 331-369 -QQ-------L----------EM------I---------KEHI---GR----GVWRCLYDPIS------N--LLITA-----GFDSSIKVH--R WD 8 370-407 LNT-------S----------L-----------------SGTS---NE----PAENADRSMKR------E--VFTTC-----IPDSLDHNR--H WD 9 411-449 -KS-------E----------YV------R---------CLRF---SS----ERTIYVATNHG------Y--LYHAT-----LSDSMGVMW--T WD10 447-485 -MW-------T----------KL------I---------HVGE---EV----QIICMDLLACS------P--FEVSG-----GAEDWIALG--D WD11 497-545 HDS-------N----------AH------TPDISFTWSAEKER---QL----LGTFWCKSLGF------R--YIFTA-----DPRGALKLW--R WD12 554-600 QNGKNYNPSLV----------AE------Y---------ISCF---GL----RIMCLDVSCEE------E--IVVCG-----DVRGNLILF--P WD13 604-642 -DL-------L----------LE------T---------PITT---GV----KIIPTCYFKGA------H--GISTV-----TSVVVARLE--S WD14 675-714 MKQ-------V----------KA------L---------TSVQ---SL----FYDQTSLDLTS------N--LYATG-----FASADFIIW--N WD15 780-818 -GR-------E----------LH------S---------LCFV---PE----ADNKLGISSRS------C--WIVTG-----CEDGTVRMT--R WD16 856-895 NGT-------I------------------T---------PDAK---DT----QESDLDDREDP------V--LLISA-----GAKRVLTSWLQK WD17 904-946 NAC-------L----------HH------N---------AKGSCEPSG----FPTSISFKWLS------T--DMPTK-----NSTSRRNSF--N WD18 1034-1083 ASL-------VPVGSPVLTLQHI------V---------FPKF---HS----DGGGETLLGNV------Y--IVISG-----ATDGSIAFW--D WD19 1097-1128 ----------------------------------------SLR---QE----KFIDFQKRPRT------G--RGSQG-----GRRRTSLST--V WD20 1157-1195 -ES-------S----------SK------V---------NISE---AN----AAGSQPDCSTS------S--ELILS-----TSNYSSEMC--D WD21 1235-1281 -GG-------D----------DQ------A---------LQCL---TF----DLSLLSENTSSEKMESESECAKFIF-----HSEDHNHKY--L WD22 1286-1321 --R-------P----------HK------I---------ESAH---SS----AIKGV--WTDG------I--WVFST-----GLDQRIRCW--K WD40 Template TGE-------C----------LR------T---------LSGH---TS----GVTSVSFSPDG------K--RLVSG-----SEDGTIKVW--D |
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