Input parameters:

  Query = 2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=416)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (2AQ5_A_PDBID_CHAIN_SEQUENCE, Len=416):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH 80  
WD40-rpts                     (_____________________WD 1_____________________)       (_________

Query       81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 
WD40-rpts      ________WD 2_________________)          (_________________WD 3_________________)

Query      161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 
WD40-rpts         (__________________WD 4_________________)   (___________________WD 5_________

Query      241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 
WD40-rpts      __________)(____________________WD 6___________________)(____________________WD 

Query      321 YMPKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLYPPTAGPDPALTAEEWLGGRDAGPLLISLKDGYVPPK 400 
WD40-rpts      7____________________)   (____________________WD 8____________________)         

Query      401 SRANDCASTMDASINT 416 
WD40-rpts                      

8 WD40-repeats found in QUERY=2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=416):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    16-63       3.58  262.57  0.01788       17.5%     45.72
  WD 2:  Seg  7    71-110      8.14  450.84  5.2e-05       32.5%     49.89
  WD 3:  Seg 11   121-160      7.63  429.93  1.0e-04       40.0%     54.32
  WD 4:  Seg 15   164-204      7.85  439.04  7.5e-05       27.5%     57.38
  WD 5:  Seg 19   208-251      5.43  338.79  0.00169       25.0%     47.53
  WD 6:  Seg 23   252-296      5.81  354.60  0.00104       30.0%     45.99
  WD 7:  Seg 27   297-342      3.86  274.10  0.01253       10.0%     42.94
  WD 8:  Seg 30   346-391      3.88  274.74  0.01229        7.5%     32.85

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-63     GQP-----AKADQCYEDVRVS----QTTWDSGFCA--VNP-KFMA-LICEA---S-------G-GGAFLVLP
   WD 2   71-110    -DK-----NVP-------LVC----GHTAPVLDIA--WCPHNDNV-I-ASG---S-------E-DCTVMVWE
   WD 3  121-160    -RE-----PVI-------TLE----GHTKRVGIVA--WHP-TAQNVL-LSA---G-------C-DNVILVWD
   WD 4  164-204    -GA-----AVL-------TLG--PDVHPDTIYSVD--WSR-DGAL-I-CTS---C-------R-DKRVRVIE
   WD 5  208-251    -GT-----VVA-------EKD----RPHEGTRPVHAVFVS-EGKI-L-TTGFSRM-------S-ERQVALWD
   WD 6  252-296    TKH-----LEE-------PLSLQELDTSSGVLLPF--FDP-DTNI-VYLCG---K-------G-DSSIRYFE
   WD 7  297-342    ITSEAPFLHYL-------SMF----SSKESQRGMG--YMP-KRGL-E-VNK---C-------EIARFYKLHE
   WD 8  346-391    -EP-----IAM-------TVP----RKSDLFQEDL--YPP-TAGP-D-PAL---TAEEWLGGR-DAGPLLIS

   WD40 Template    TGE-----CLR-------TLS----GHTSGVTSVS--FSP-DGKR-L-VSG---S-------E-DGTIKVWD