Input parameters:

  Query = CmaCh08G007590 (Len=488)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh08G007590, Len=488):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNGGNEVVAAQAGPPQPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDL 80  
WD40-rpts                               (__________________WD 1_________________)              

Query       81 ERTDNAISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWKVQEKKVKKVSTMNVD 160 
WD40-rpts                       (_____________________WD 2_____________________)  (____________

Query      161 PSKSAGNGSNASSSNSSSSGTYLANGGSPNRCLNNDLSFPVRGVQSLRLPVVTTHETNLMARCRRVYAHAHDYHINSISN 240 
WD40-rpts      __________WD 3_____________________)                (_____________________WD 4__

Query      241 NSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFF 320 
WD40-rpts      __________________)(_______________WD 5______________)                 (________

Query      321 TEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVAAFQLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVF 400 
WD40-rpts      _________WD 6_________________)             (________________WD 7_______________

Query      401 GCISGSSEATTLEASKNPMRRQVQTPSRPARSLSSSISRVVRRGAESPGNDANGNSFDFTTKLLHLAWHPTENSIACAAA 480 
WD40-rpts      )    (_________________WD 8________________)     (_________________WD 9_________

Query      481 NSLYMYYA 488 
WD40-rpts      _______)

9 WD40-repeats found in QUERY=CmaCh08G007590 (Len=488):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    26-66       7.86  439.35  7.5e-05       17.5%     37.07
  WD 2:  Seg  6    98-145      3.86  273.90  0.01261       12.5%     38.25
  WD 3:  Seg  9   148-196      3.87  274.53  0.01237       20.0%     10.91
  WD 4:  Seg 11   213-259      5.97  361.10  0.00085       25.0%     50.30
  WD 5:  Seg 15   260-294      5.42  338.45  0.00171       15.0%     24.10
  WD 6:  Seg 19   312-351      7.00  403.62  0.00023       22.5%     42.23
  WD 7:  Seg 23   365-401      5.40  337.88  0.00174       20.0%     35.44
  WD 8:  Seg 26   406-444      3.77  270.39  0.01405       10.0%     40.74
  WD 9:  Seg 29   450-488      4.21  288.67  0.00799        5.0%     38.07

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-66     FGERTAG--------E-E---------VQEVDIISAIEFDKSGD--HLATGDRGGRVVLFE
   WD 2   98-145    EFQ-SHE--PEFDYLK-S---------LEIEEKINKIRWCQPANGALFLLSTNDKTIKYWK
   WD 3  148-196    EKK-VKK--------V-STMNVDPSKSAGNGSNASSSNSSSSGT--YLANGGSPNRCLNND
   WD 4  213-259    TTH-ETNLMARCRRVY-A---------HAHDYHINSISNNSDGE--TFIS-ADDLRINLWN
   WD 5  260-294    ------L--------E-I---------SNQSFNIVDVKPANMED--LTAYSSSKGSIRLID
   WD 6  312-351    EAP-GSR--------SFF---------TEIIASISDIKFGKDGR--YILSRD-YMTLKLWD
   WD 7  365-401    ----CDL--------Y-E---------NDSIFDKFECCLSGDGL--RVATGSYSNLFRVFG
   WD 8  406-444    -SS-EAT--------T-L---------EASKNPMRRQVQTPSRP--ARSLSSSISRVVRRG
   WD 9  450-488    -ND-ANG--------N-S---------FDFTTKLLHLAWHPTEN--SIACAAANSLYMYYA

   WD40 Template    TGE-CLR--------T-L---------SGHTSGVTSVSFSPDGK--RLVSGSEDGTIKVWD