Input parameters:

  Query = CsaV3_4G003480 (Len=438)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G003480, Len=438):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSYQQQNMDEFDYMAAGHEMADDIDDGGDGESGDDEFDMLTKSIDTSSALARKGLDIQGIPWDRLNISREKYRLTRLEQY 80  
WD40-rpts                                                                                      

Query       81 KNYENIPSSGAAVDKECKAIEKGGNYYEFFHNTRLVKPTILHFQLRNLVWATSKHDVYLMSNYSVMHWSSLSGNLSEILN 160 
WD40-rpts                                                                                      

Query      161 FAGHIAPTEKHAGSLLEGFTQTQISTLAVKDNFLVAGGFQGELTCKRLDKQGVSFCTRTTHDENAITNAVEIYDSRSGEL 240 
WD40-rpts               (_________________WD 1________________)   (___________________WD 2_____

Query      241 HFMAANNDCSMREYDMERFQLLNHFHFPWPVNHTSVSPDRRLIVVVGDHTDGLIVDSRNGTTIGTVVGHRDYSFASAWHP 320 
WD40-rpts      ______________)(__________________WD 3_________________)   (_________________WD 

Query      321 DGRMFATGNQDKTCRVWDVRNFSTPVAVLKGHIGAARSIRYSSDGQFMVVAEPADFVHVYSTSTDYKKRQEIDFFGEISG 400 
WD40-rpts      4________________)    (_________________WD 5________________)   (_______________

Query      401 VSLSPDDESLYIGIWDRTYASLLQYNRRHTYGYIDSFL 438 
WD40-rpts      __WD 6________________)               

6 WD40-repeats found in QUERY=CsaV3_4G003480 (Len=438):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   170-208      6.28  374.16  0.00056       15.0%     43.31
  WD 2:  Seg 11   212-255      6.01  362.75  0.00080       17.5%     42.61
  WD 3:  Seg 15   256-296      6.83  396.59  0.00028       20.0%     57.84
  WD 4:  Seg 19   300-338     10.20  536.02  3.7e-06       32.5%     53.56
  WD 5:  Seg 23   343-381      8.62  470.93  2.8e-05       22.5%     56.91
  WD 6:  Seg 27   385-423      7.55  426.35  0.00011       25.0%     52.15

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  170-208    -KHA-GSLLEGF-----TQTQISTLAVKDNFLVAGGFQGELTCKRL
   WD 2  212-255    -GVS-FCTRTTHDENAITNAVEIYDSRSGELHFMAANNDCSMREYD
   WD 3  256-296    MERFQLLNHFHF-----PWPVNHTSVSPDRRLIVVVGDHTDGLIVD
   WD 4  300-338    -GTT-IGTVVGH-----RDYSFASAWHPDGRMFATGNQDKTCRVWD
   WD 5  343-381    -STP-VAVLKGH-----IGAARSIRYSSDGQFMVVAEPADFVHVYS
   WD 6  385-423    -DYK-KRQEIDF-----FGEISGVSLSPDDESLYIGIWDRTYASLL

   WD40 Template    TGEC-LRTLSGH-----TSGVTSVSFSPDGKRLVSGSEDGTIKVWD