Input parameters:

  Query = CmaCh13G005760 (Len=827)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh13G005760, Len=827):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIKDTEMEFPECPVCLQTYDGESTVPRVLSCGHSACGTCLDNLPQRYPETIRCPACNVLVKYPSQGASALPKNIDLLRLC 80  
WD40-rpts                                                                                      

Query       81 PQHNAGQQISKKPINQNHEMFPQLWSDEFYKAWKHWVLPHAAVSIERGDADDGVERLLLGRIVPISDSDSSFPIRVGEDR 160 
WD40-rpts                                                                                      

Query      161 TVSLVRVVSLPCSNSDHVFKLSYTSRVLKCLSELKDRERDELGLILGAGIMNGGRMCRTYGLWGNLEDGFLYLVCERRND 240 
WD40-rpts                                                                                      

Query      241 NLVDRINNWIKKLDIRNKVGLNKDDLCSFALIATELCEAIIAMHSLRLSIGFLGLSCFSVGEFGCVCVDLNGVLTMGRTV 320 
WD40-rpts                                                                                      

Query      321 RTAVEAVSIGSKLDTKELGIIISNLMKKEAFVSPEVLLKLLRKDDVVLECGTTLCSVGNKCDIWCLVFVLLSLLLGKECI 400 
WD40-rpts                                                                                      

Query      401 VVSLEEIQSDCSAFYGSWVEKVNSCLNTKFGSEYSSLNQTLCRSLSFNPENRPCVVELLRCFRELIVVSELDALGSLKLV 480 
WD40-rpts                                                                                      

Query      481 VNEYGADHCLVLGDLIQLPHELTETQSDDMDRIGAERTTKAFVDGLSAGMVKSSDMLGHRDSVTSLVVGGGYLFSSSYDK 560 
WD40-rpts          (__________________WD 1_________________)(__________________WD 2____________

Query      561 TVQAWSLQDFSHVHTFIGHEHRITDLAYIDEEQPLCVSADIGGGIYVWSIVLPLKQDPLKKWYEEKDWRYDGIHALAYSG 640 
WD40-rpts      _____)   (_________________WD 3_________________)          (________________WD 4

Query      641 NGCLYTGGGDRSVKAWSLKDGTLSGSMYGHKSVVSALLASNGILYSGSWDGTVRLWSLSDRSQLAVLGEESTGSLGSVLC 720 
WD40-rpts      ________________)   (________________WD 5_______________)   (__________________W

Query      721 LAANMDILVATHENGSIKLWRNDVFMKTMKLHDGAIFATSMLGKQLVTGGRDKAINVQELFDNELEIDCRHLGSIPSNST 800 
WD40-rpts      D 6_________________)(________________WD 7________________)(____________________

Query      801 VTALLCWQDKLYVGYADRCIKVYYYGK 827 
WD40-rpts      WD 8___________________)   

8 WD40-repeats found in QUERY=CmaCh13G005760 (Len=827):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19   485-525      4.06  282.16  0.00977       10.0%     49.27
  WD 2:  Seg 23   526-566      6.83  396.64  0.00028       30.0%     53.28
  WD 3:  Seg 27   570-609      7.53  425.91  0.00011       27.5%     55.19
  WD 4:  Seg 31   620-657      6.07  365.57  0.00074       20.0%     44.41
  WD 5:  Seg 34   661-697      7.62  429.47  0.00010       35.0%     53.92
  WD 6:  Seg 38   701-741      6.82  396.44  0.00028       25.0%     54.32
  WD 7:  Seg 42   742-779      8.32  458.34  4.1e-05       27.5%     48.22
  WD 8:  Seg 46   780-824      5.98  361.62  0.00083       25.0%     46.10

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  485-525    GAD----HCLVLGDLIQLP--HELTETQSDDMDR-IGAERTTKAFVDG
   WD 2  526-566    LSA--GMVKSSDMLGHRDS--VTSLVVG--GGYL-FSSSYDKTVQAWS
   WD 3  570-609    -FS-----HVHTFIGHEHR--ITDLAYIDEEQPLCVSADIGGGIYVWS
   WD 4  620-657    -KK-----WYEEKDWRYDG--IHALAYSGNG-CL-YTGGGDRSVKAWS
   WD 5  661-697    -GT-----LSGSMYGHKSV--VSALLAS--NGIL-YSGSWDGTVRLWS
   WD 6  701-741    -RS-----QLAVLGEESTGSLGSVLCLAANMDIL-VATHENGSIKLWR
   WD 7  742-779    NDV-----FMKTMKLHDGA--I--FATSMLGKQL-VTGGRDKAINVQE
   WD 8  780-824    LFDNELEIDCRHLGSIPSN--STVTALLCWQDKL-YVGYADRCIKVYY

   WD40 Template    TGE-----CLRTLSGHTSG--VTSVSFSPDGKRL-VSGSEDGTIKVWD