WDRR: WD40 Repeat Recognition
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| JobID: BOO071659514093 Submitted: 2022-08-03 16:08:13 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79737993 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_1G045780 (Len=962) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_1G045780, Len=962): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEESGTKSAELDFAMEDSGNASPESGERYNTPSKDFVCPITCNIFYDPVTLETGQTYERSAIQEWLERGNSTCPITGQKL 80
WD40-rpts
Query 81 ENTQLPKTNYVLKRLIASWLEENPNFALDKPIDEADPLVVLTSPVSVISQASIDRGMKEVRRAIVNLYASEVLEEAEAAV 160
WD40-rpts
Query 161 LCVERFWLEENVEMDIQLMLLKPPVINGLVEILVNSVNEQVLSAAIFLLSELGFKDAAVIQTLSRVESDVDCIVTLFKGG 240
WD40-rpts
Query 241 FMEAVVLIYQLGLSSQSLQEMDMVGSLLNAIKKNERDVNKMRLSHKSAAVILLRKILGKSKEGSLIAVVVLAENAIECII 320
WD40-rpts
Query 321 GSLKAKQVEERISAVGILLRCIQEDGRCRNIIADTADLALVLESFIEVSNHEQFEIITFLSELVKLNRRTFNEQILQNIK 400
WD40-rpts
Query 401 DGGEYSTMHSLLIYLQTARRDQSPVVAGLLLQLDVLVEPRKMSIYREEAMDILISCLGDSDFPSTQISAAETIMSLQGRF 480
WD40-rpts
Query 481 STSGRPLTRYFLLERAGFTKGHRKSIQRDTIRSAPGEVELTREEERAADEWERKMAFVLISHDFGLLFEPLAKGLNSKFA 560
WD40-rpts
Query 561 ALFSACFVSATWLSHMLRSLPDTGILETARVCLLDHFLSIFTTTTDVEEKTLGLLAINSFVHEPDGLQCLSSNMKDIMRG 640
WD40-rpts (________
Query 641 LRELKRSTPLAFEMLKVLCEEQDLTSEFWCHQELFQVDCSTNGEVLSIAYFKDKIISGHSDGRIKVWAVRGTNLHLIHEV 720
WD40-rpts _________WD 1________________)(________________WD 2________________) (______
Query 721 QEHSKGVTSLVVLEFEEKLYSGSLDKTIKVWSLGSDTIQCIQLHDVKDQIHNLVVSKTVACFIPHGAGIRVYSWGGESKL 800
WD40-rpts ___________WD 3________________)(___________________WD 4__________________)(____
Query 801 LNSSKHVKCLNLVGGKLFCGCHDSSIQEVDLATGTLSYIHSGSRKLLGKANPIQALQVYDEQLFSASTALDGAAVKIWST 880
WD40-rpts ___________WD 5______________) (_________________WD 6_________________)
Query 881 SNYGMIGSLTTSLDVRSMAVSSDLTYLGGKGGMVEIWSREKHNKIDTLQMGRNCKIVCMALDEREEVLVIGTSDGRIQGW 960
WD40-rpts (_______________WD 7_______________) (_________________WD 8_________________
Query 961 GL 962
WD40-rpts )
 8 WD40-repeats found in QUERY=CsaV3_1G045780 (Len=962): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 9 632-670 5.62 346.96 0.00131 12.5% 25.02 WD 2: Seg 12 671-708 8.50 465.85 3.3e-05 30.0% 49.22 WD 3: Seg 16 714-752 9.36 501.12 1.1e-05 37.5% 54.74 WD 4: Seg 20 753-795 6.23 372.06 0.00060 10.0% 46.73 WD 5: Seg 24 796-830 4.91 317.65 0.00326 20.0% 43.53 WD 6: Seg 29 840-879 6.69 390.95 0.00033 20.0% 44.85 WD 7: Seg 32 883-918 4.82 313.60 0.00369 20.0% 49.00 WD 8: Seg 36 922-961 7.26 414.61 0.00016 25.0% 51.68Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 632-670 -SN---MKDIMR-GLRELKRSTPLAFEMLKVLCEEQDL-TSEFWC WD 2 671-708 HQE---LFQVDC-STNGEVLSIAYFKDK--IISGHSDG-RIKVWA WD 3 714-752 -LH---LIHEVQ-EHSKGVTSLVVLEFEEKLYSGSLDK-TIKVWS WD 4 753-795 LGSDTIQCIQLH-DVKDQIHNLVVSKTVACFIPHGAGI-RVYSWG WD 5 796-830 ------GESKLL-NSSKHVKCL--NLVGGKLFCGCHDS-SIQEVD WD 6 840-879 -HS---GSRKLL-GKANPIQALQVYDEQLFSASTALDGAAVKIWS WD 7 883-918 -YG---MIGSLT-TSLD-VRSMAVSSDL--TYLGGKGG-MVEIWS WD 8 922-961 -HN---KIDTLQMGRNCKIVCMALDEREEVLVIGTSDG-RIQGWG WD40 Template TGE---CLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDG-TIKVWD |
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