WDRR: WD40 Repeat Recognition
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| JobID: BKPQI1659460497 Submitted: 2022-08-03 01:14:57 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79789362 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh03G004280 (Len=921) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh03G004280, Len=921): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MERKKTMTMNWAGLQDDDDDDRFFESIERMSCAMPEDLASSSDDDDFEDSRMSFASVVSSKHHEDFRAFAVATPMKPEYD 80
WD40-rpts
Query 81 IWMAAPGSITERRKRLLEGMGLNSGKQFQRIQSKEIQREVSRKLLEDVQVCQPEIVESPDVDQKQDASQTPLPIVLVRSR 160
WD40-rpts
Query 161 SDGDIDTFSFTKRRKDELIGNVSKQRLTRTYSMIMASSARMCNYPESIRVAANECGQTIRHGATLSTVISNNRFGSFFLI 240
WD40-rpts (_________________WD 1________________)
Query 241 KNLDTGNEFIVNGYDQDGMWNRLSDIQTGKQLTMEEFEKCVGYSSVVKEMMRRGNGFFGDKKLNMNSLSKSLRMSKRRGA 320
WD40-rpts (___________________WD 2__________________)
Query 321 ALLKNIKGSMTGLMGEKELSQALDSKPSKNASSTNSPPSSSTAAPSSSEWVKVRQSGRSYKELSALHFCQEIQAHEGSIW 400
WD40-rpts (_________________WD 3________________)(______________________WD
Query 401 TLKFSCDAKLLASGGEDRIIHVWEVQECEVMSMKPNEEGSLTPLHPNFCPSPDRNAAGDASPLPSEKRKKGKGLSGSRKG 480
WD40-rpts 4_____________________) (__________________WD 5_________________)
Query 481 NVIPDYVHVPESVFSLSDKPICSLSGHLDDILDLSWSSNSQLLLSSSMDKTVRLWDMETKSCLKMFAHNDYVTCIQFNPM 560
WD40-rpts (_________________WD 6________________) (_________________WD 7
Query 561 DDNQFISGSLDAKVRIWNIPDRYVVDWTDLHEMVTAACYTPDAQGAIIGSHKGICRTYTIEDSKLEQKHQVDVQSKKKAQ 640
WD40-rpts _________________) (________________WD 8________________) (_________
Query 641 GKKITGFQFVPGSPTEVLVTSADSRIRILEGTEITQRFRGFRNTNSQLTASFSQDGKYVICASEDSQVFVWRREEPRNSN 720
WD40-rpts ________WD 9_________________) (_________________WD10________________) (____
Query 721 SGKKSLIATRGYEHFPCKDVSVAIAWPGMINGEPQLSQMNSKRNSKRCPSQSASACSSPTREEGSSVGNSKKQLPPLPKK 800
WD40-rpts _____________WD11________________)(______________WD12_____________) (_
Query 801 NNNAAENNTASTTPPDEEPQQPAQVTRSDSKTGESLTPSPSIRSGDSPSISSAAINSSSSSSWPSTWSWFDVGNSHGHHA 880
WD40-rpts ________________WD13________________)
Query 881 IPATAWGLVIVTAGLGGEIRAYQNFGLPRRIGRQTNFWPTA 921
WD40-rpts
 13 WD40-repeats found in QUERY=CmaCh03G004280 (Len=921): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 194-232 6.41 379.62 0.00048 10.0% 35.05 WD 2: Seg 10 274-316 5.81 354.57 0.00104 20.0% 48.53 WD 3: Seg 15 337-375 7.31 416.47 0.00015 22.5% 40.71 WD 4: Seg 18 376-424 9.06 488.92 1.6e-05 35.0% 52.99 WD 5: Seg 22 428-468 4.10 284.10 0.00920 15.0% 20.12 WD 6: Seg 24 498-536 9.59 510.94 8.1e-06 32.5% 54.11 WD 7: Seg 28 539-578 7.59 428.11 0.00011 27.5% 53.23 WD 8: Seg 32 582-619 6.83 396.96 0.00028 20.0% 56.25 WD 9: Seg 37 631-670 6.67 390.21 0.00034 15.0% 49.48 WD10: Seg 40 674-712 8.67 472.88 2.6e-05 30.0% 58.33 WD11: Seg 44 716-754 6.58 386.50 0.00038 10.0% 34.91 WD12: Seg 47 755-787 4.30 292.45 0.00711 5.0% 33.41 WD13: Seg 49 799-837 5.11 325.67 0.00254 15.0% 23.05Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 194-232 IM---------ASSARMCNYPESI-RV--AANE-CG----Q-TIRHGATLSTVISNN WD 2 274-316 -M---------EEFEKCVGYSSVVKEM--MRRG-NGFFGDK-KLNMNSLSKSLRMSK WD 3 337-375 -K---------ELSQALDSKPSKNASS--TNSP-PS----S-STAAPSSSEWVKVRQ WD 4 376-424 SGRSYKELSALHFCQEIQAHEGSIWTL--KFSC-DA----K-LLASGGEDRIIHVWE WD 5 428-468 -C---------EVMSMKPNEEGSLTPLHPNFCP-SP----D-RNAAGDASPLPSEKR WD 6 498-536 -D---------KPICSLSGHLDDILDL--SWSS-NS----Q-LLLSSSMDKTVRLWD WD 7 539-578 -T---------KSCLKMFAHNDYVTCI--QFNPMDD----N-QFISGSLDAKVRIWN WD 8 582-619 -R---------YVVDWTDLHEM-VTAA--CYTP-DA----Q-GAIIGSHKGICRTYT WD 9 631-670 -V---------DVQSKKKAQGKKITGF--QFVP-GS----PTEVLVTSADSRIRILE WD10 674-712 -I---------TQRFRGFRNTNSQLTA--SFSQ-DG----K-YVICASEDSQVFVWR WD11 716-754 -P---------RNSNSGKKSLIATRGY--EHFP-CK----D-VSVAIAWPGMINGEP WD12 755-787 ----------------QLSQMNSKRNS--KRCP-SQ----S-ASACSSPTREEGSSV WD13 799-837 -K---------KNNNAAENNTASTTPP--DEEP-QQ----P-AQVTRSDSKTGESLT WD40 Template TG---------ECLRTLSGHTSGVTSV--SFSP-DG----K-RLVSGSEDGTIKVWD |
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