WDRR: WD40 Repeat Recognition
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| JobID: BETMK1659505805 Submitted: 2022-08-03 13:50:05 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79745645 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh20G008180 (Len=1219) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh20G008180, Len=1219): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLTKFETKSNRIKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
WD40-rpts (_______________WD 1______________) (_________________WD 2________________)
Query 81 KTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
WD40-rpts (_________________WD 3________________) (_________________WD 4______________
Query 161 VWDIGALRKKTVSPADDVLRLSQMNADLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
WD40-rpts __) (_________________WD 5________________)(_______
Query 241 VDTLRGHMNNVSCVMFHPKQDIIVSNSEDKSIRIWDATKRTGLQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLER 320
WD40-rpts ____________WD 6___________________) (________________WD 7________________)
Query 321 ERPAFAISGDSLFYVKDRFLRCYEFSSKKDSQVIPIRRPGSTSLNQSPRTLSFSPTENTVLICSDLDGGCYEFYTIPKDS 400
WD40-rpts
Query 401 FGRSDSFQDAKRGLGGSAVFVARNRFSVLDKSHNQVLLKNLKNEVVKKVPIPITADAIFYAGTGNLLCRAEDRVVIYDLQ 480
WD40-rpts (_
Query 481 QRIILGDLQTPFVKYVVWSNDMESVALLSKHAIIIANKKLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDS 560
WD40-rpts ________________WD 8_________________)
Query 561 GIIKTLDVPIYITKVSGNTLFCLDRDGTVRSFVIDATEYIFKLSLLKKRFDHVMSMIRNSQLCGQAMIAYLQQKGFPEVA 640
WD40-rpts
Query 641 LHFVKDERTRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYTYQKTKNFDRLSFLYLITGNTAKLSK 720
WD40-rpts
Query 721 MLKIAEVKNDVMGQFHNALYLGDVRERIKILENVGHLPLAYITASTHGLHDVAERLAAELGDDIPSLPEGKTASLLLPPT 800
WD40-rpts
Query 801 PVMCSGDWPLLRVMKGIFEGGLDNVGGGRADEDDYEVADGDWGEELEVVDVDGLQNGDVSAILEDGEGAEENEEEGGWDL 880
WD40-rpts
Query 881 EDLELPPEADTPKVSVSSRNSVFVAPTPGLPANQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIKNFAPLRPIFLDLHA 960
WD40-rpts
Query 961 GSQTYLRASSSAPIISLAVERGFSESSNANTKGSPALIYSFTQLEEKLKAGYKATTSGKFAEALRLFLTILHTIPLIVVE 1040
WD40-rpts
Query 1041 SRREVDEVKELIIIVKEYVLGLQMELKRRELKDNPVRQMELAAYFTHCNLQLPHLRLALLNAMTVCYKAKNLASAANFAR 1120
WD40-rpts
Query 1121 RLLETNPSIENQAKTARQVLQAAERNMTDASQLNYDFRNPFVTCGATYVPIYRGQKDVACPYCSSRFVPGQEGQICTVCD 1200
WD40-rpts
Query 1201 LAVIGADASGLLCSPTQNR 1219
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh20G008180 (Len=1219): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-37 4.51 300.81 0.00549 17.5% 48.99 WD 2: Seg 4 41-79 7.40 420.25 0.00013 32.5% 57.26 WD 3: Seg 8 83-121 8.50 465.73 3.3e-05 37.5% 56.93 WD 4: Seg 12 125-163 8.89 482.01 2.0e-05 40.0% 55.99 WD 5: Seg 17 194-232 7.66 431.14 9.6e-05 32.5% 55.89 WD 6: Seg 21 233-276 8.56 468.42 3.0e-05 40.0% 55.48 WD 7: Seg 25 280-317 3.25 248.82 0.02727 17.5% 56.46 WD 8: Seg 43 479-518 3.35 252.99 0.02400 17.5% 41.89Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-37 T---------KFETKSNRIKGLSFHSKRPWILASLHSGVIQLWD WD 2 41-79 -GTL----IDRFDEHEGPVRGVHFHKSQPLFVSGGDDYKIKVWN WD 3 83-121 -HRC----LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN WD 4 125-163 -RTC----ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD WD 5 194-232 -AVV----KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR WD 6 233-276 MNDTKAWEVDTLRGHMNNVSCVMFHPKQDIIVSNSEDKSIRIWD WD 7 280-317 -RTG----LQTFRREHDRFWILAAHPEMNLLAAGH-DSGMIVFK WD 8 479-518 LQQR----IILGDLQTPFVKYVVWSNDMESVALLSKHAIIIANK WD40 Template TGEC----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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