Input parameters:

  Query = CsaV3_2G007870 (Len=493)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G007870, Len=493):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MISAVSWVPKGVCKPLPDLADPPSQETIDQLLKSNQVVEDSSKHSDDEADEEDMDVEDANDEEIANALAVAQALGKSSET 80  
WD40-rpts                                                                                      

Query       81 RNLETKYDDIAEELKELDMDNYDNEDDEIELFTSGAGDVYYPSNDMDPYLQDKDGDDSEDIEDETIKPTDAVIICACSED 160 
WD40-rpts                                               (_____________________WD 1_____________

Query      161 NVSALQVWICEGYGVGDPNFYIHRDIIIPAFPLCTAWLDCPLKGGERGNFIAVGSMEPSIEIWDLDVIDEVQPCAVLGGI 240 
WD40-rpts      ________)              (__________________WD 2_________________)                

Query      241 VEKKKKKKKGKKTSVTYKENSHTDSVLGLAWNKEFRNILASASADKQVKIWDVSTGQCNITMQHHIDKVQAVAWNHHSSQ 320 
WD40-rpts                  (_________________WD 3_________________)   (_________________WD 4___

Query      321 VLLSGSFDHSVVLKDGRNPSHSGYKWQVTADVENLAWDPHTEHMFVVSLEDGTVKGFDIRNATTESSSESKASFTLHAHE 400 
WD40-rpts      ______________)   (_________________WD 5_________________)           (__________

Query      401 KAVCSVSYSPSAPNLLATGSTDKMVKLWDLSNNEPSCLASTNPKAGAVFSVSFSEDCPFLLAIGGSKGKLEVWDTLTDAA 480 
WD40-rpts      _______WD 6_________________)(____________________WD 7___________________)      

Query      481 VSRKYGNYSQQRS 493 
WD40-rpts                   

7 WD40-repeats found in QUERY=CsaV3_2G007870 (Len=493):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   122-169      4.66  307.27  0.00449        7.5%     50.20
  WD 2:  Seg  8   184-224      7.35  418.40  0.00014       17.5%     26.36
  WD 3:  Seg 11   253-292      7.82  437.84  7.8e-05       25.0%     49.23
  WD 4:  Seg 15   296-335      8.24  454.86  4.6e-05       30.0%     54.45
  WD 5:  Seg 19   339-378      6.98  402.85  0.00023       25.0%     55.31
  WD 6:  Seg 23   390-429      8.15  451.38  5.1e-05       40.0%     53.97
  WD 7:  Seg 27   430-474      7.66  431.22  9.6e-05       37.5%     58.02

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  122-169    PS----NDMDPYLQDKDGDDSEDIE-DETIKPTD-A-V-I-ICACSEDNVSALQVWI
   WD 2  184-224    RD----I-----IIPAFPLCTAWLDCPLKGGERG-N-F-I-AVGSME---PSIEIWD
   WD 3  253-292    -T----S-----VTYKENSHTDSVL-GLAWNKEF-R-NIL-ASASAD---KQVKIWD
   WD 4  296-335    -G----Q-----CNITMQHHIDKVQ-AVAWNHHS-S-QVL-LSGSFD---HSVVLKD
   WD 5  339-378    -P----S-----HSGYKWQVTADVE-NLAWDPHT-E-H-MFVVSLED---GTVKGFD
   WD 6  390-429    -S----K-----ASFTLHAHEKAVC-SVSYSPSAPN-L-L-ATGSTD---KMVKLWD
   WD 7  430-474    LSNNEPS-----CLASTNPKAGAVF-SVSFSEDC-PFL-L-AIGGSK---GKLEVWD

   WD40 Template    TG----E-----CLRTLSGHTSGVT-SVSFSPDG-K-R-L-VSGSED---GTIKVWD