WDRR: WD40 Repeat Recognition
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| JobID: BATR11659461981 Submitted: 2022-08-03 01:39:41 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79754346 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh05G009390 (Len=989) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh05G009390, Len=989): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDVDDQNPASTAAESPEILPGGENEDLDNPAEPMQPAATTVIPSSIVPSIAPIPPPLITRPLAPLPSRPLLFRPPVAQNG 80
WD40-rpts
Query 81 EMRTSDSDSEHDELAPSRATQGSTAEYEVSEESRQVRERQEKAMQEFLMKRRASALAVPTNDMAVRARLRRLGEPITLFG 160
WD40-rpts
Query 161 EREMERRDRLRSIMARLDAEGQLEKLLKVHEEEEAAATGGTEEAEEEVLQYPFYTEGPKALLDARIDIAKYSIVRAASRL 240
WD40-rpts
Query 241 ERAKRKRDDPDEDVEAEMDWALRQAESLILDCSEIGDDRPLSGCSFSSDGKFLATSSLSGVAKMWSMPQVRKVSNFKGHT 320
WD40-rpts (________________WD 1_______________)(_____________
Query 321 ERVTDVIFSPVNECLATASADRTARLWSAEGSLLRTFEGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDIETGVELLLQE 400
WD40-rpts _____WD 2__________________) (_________________WD 3________________) (_______
Query 401 GHSRSVYGIDFHHDGSLVSSCGLDALARVWDLRTGRSVLALEGHVKPVLGVNFSPNGYHLATGGEDNTCRIWDLRKKKSL 480
WD40-rpts __________WD 4________________) (_________________WD 5________________) (___
Query 481 YIIPAHSNLISQVKYEPQEGYFLVTASFDMTAKIWSARDFKPVKTLSGHEAKVTSLDIISAKMNKLWTLIEFHSTDMGDV 560
WD40-rpts ______________WD 6_________________) (_____________WD 7_____________)
Query 561 SKALQAHVEFLQTSPSIFVTQFLFPFQLSMGNCFGSSAKVEIAHSSRPTSEISRSSSKKHNPIVPSYNPNSVADRNDNNN 640
WD40-rpts
Query 641 VLNLPTPRTEGEILSSSNLKPFHFNELKNATRNFRPDSLLGEGGFGYVFKGWIDENKLAAARPGLGMVVAVKKLKAEASQ 720
WD40-rpts
Query 721 GHKEWLTEVDYLGKFHHPNLVKLIGYCLEGENRLLVYEFMPRGSLENHLFRRGSQPLSWALRIKVAIAAARGLSFLHEAE 800
WD40-rpts
Query 801 SPVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVTTQVMGTRGYAAPEYIATGRLTSKSDVYSFGVVLLELLSG 880
WD40-rpts
Query 881 LRAEDNLVEWAMPYLGDKRRLFRIMDTKLEGRYSKKGAYVAANLASQCLRREPRARPRMTEILGELEELESPKTAARISH 960
WD40-rpts
Query 961 SVQRETIALSNSKVDASLSTLYQKSPQRQ 989
WD40-rpts
 7 WD40-repeats found in QUERY=CmaCh05G009390 (Len=989): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 270-306 4.84 314.71 0.00357 30.0% 35.00 WD 2: Seg 4 307-348 7.35 418.09 0.00014 35.0% 40.84 WD 3: Seg 8 351-389 8.12 450.05 5.3e-05 40.0% 29.50 WD 4: Seg 11 393-431 7.53 425.79 0.00011 32.5% 40.02 WD 5: Seg 15 435-473 9.71 515.91 6.9e-06 42.5% 42.00 WD 6: Seg 19 477-516 5.76 352.61 0.00110 30.0% 34.18 WD 7: Seg 22 520-551 2.87 233.11 0.04403 22.5% 31.78Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 270-306 ---L--DCSEIGDDRPLSGCSFSS-DGKFLATSSLSGVAKMWS WD 2 307-348 MPQVRKVSNFKGHTERVTDVIFSP-VNECLATASADRTARLWS WD 3 351-389 -GSL--LRTFEGHLDRLARIAFHP-SGKYLGTTSFDKTWRLWD WD 4 393-431 -GVE--LLLQEGHSRSVYGIDFHH-DGSLVSSCGLDALARVWD WD 5 435-473 -GRS--VLALEGHVKPVLGVNFSP-NGYHLATGGEDNTCRIWD WD 6 477-516 -KKS--LYIIPAHSNLISQVKYEPQEGYFLVTASFDMTAKIWS WD 7 520-551 -FKP--VKTLSGHEAKVTSLD--------IISAKMNKLWTLIE WD40 Template TGEC--LRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD |
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