WDRR: WD40 Repeat Recognition
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JobID: B5TSM1659503646    Submitted: 2022-08-03 13:14:06

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Job status:  [Done] Total run time: 79747383 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters: 
  Query = CmaCh15G013050 (Len=749)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3
Query sequence (CmaCh15G013050, Len=749): 
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRDNKREELMDLIFSEEEFERFYDTREEISSVSDWGSDCSEICSTSFGDDKDVLENLSYGGWMRDLESVYERRNKFFKWM 80  
WD40-rpts                                                                                      

Query       81 GLDLDQNFDIRDEEEGDSCRWVHRDRIREDRGTVLRLSGSVGEFSSSLTMSSMLNEAPESSGNVAVEENCTIRNLDNGTE 160 
WD40-rpts                                   (____________________WD 1___________________)      

Query      161 FIVDSFNEDGALSVLREVGSNRSFSFDEFERNIGQSPLVRKLFRKNVEKAGPIVNARKEAKKGWMRKLGTVACIVDNGEG 240 
WD40-rpts            (_________________WD 2_________________)                (_________________

Query      241 ATKSSVSNSSSKTGIQQVRVHPYKKNSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGIVRVWQVSEDVKFDN 320 
WD40-rpts      _WD 3__________________)             (______________WD 4______________)   (_____

Query      321 FDIHDVDPSSLYFSMNHSSKLEPLDVPNESVGKTKVKRSSSTACVIFPPKLFRILEKPLHEFSGHSGKILDLSWSKKGLL 400 
WD40-rpts      ___________________WD 5________________________)       (________________WD 6____

Query      401 LSSSVDKTVRLWQLGRDTCLRVYCHNNYVTCVSFNPQDENHFISGSIDGKVRIWEVLACQVVDYIDIREIVSAVCYRPDG 480 
WD40-rpts      ____________)(__________________WD 7__________________)(__________________WD 8__

Query      481 KGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSSGNRIIGFEFSPSDPSKLMVCSVDSLVHIISEGDVICKFKGLRN 560 
WD40-rpts      _______________)              (________________WD 9_______________)(____________

Query      561 GGNKMSASFTSDGKHIVSASEENVYVWNYNCKDKASRKKKIWSSESFFSRSAAIAIPWSGVKITPEPPLSPTQVCNTAGS 640 
WD40-rpts      ______WD10_________________)         (_________________WD11________________)(___

Query      641 ILEMEPKYPDDNGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSITTPFPSMCKTEFKLLKNACQSMLSS 720 
WD40-rpts      _________________WD12____________________)                  (__________________W

Query      721 PHMWGLVIVTAGWDGRIRTFLNYGLPIRL 749 
WD40-rpts      D13_________________)


13 WD40-repeats found in QUERY=CmaCh15G013050 (Len=749):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   110-154      4.74  310.59  0.00405       12.5%     27.20
  WD 2:  Seg  6   167-206      4.33  293.71  0.00684        7.5%     22.27
  WD 3:  Seg  9   223-264      3.90  275.93  0.01185       10.0%     29.30
  WD 4:  Seg 12   278-311      8.75  475.97  2.4e-05       27.5%     49.53
  WD 5:  Seg 15   315-368      5.69  349.71  0.00121       20.0%     50.53
  WD 6:  Seg 19   376-413      7.71  433.02  9.1e-05       32.5%     52.95
  WD 7:  Seg 23   414-455      8.11  449.64  5.4e-05       37.5%     54.30
  WD 8:  Seg 27   456-496      7.02  404.49  0.00022       25.0%     54.88
  WD 9:  Seg 32   511-547      6.34  376.56  0.00052       20.0%     49.54
  WD10:  Seg 35   548-588      7.37  419.15  0.00014       37.5%     53.77
  WD11:  Seg 39   598-636      6.37  377.71  0.00051        7.5%     42.25
  WD12:  Seg 43   637-682      3.76  270.14  0.01416       20.0%      4.20
  WD13:  Seg 44   701-741      5.70  350.06  0.00119       22.5%     49.51
Multiple sequence alignment of 13 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  110-154    DR------GT-VLRLSGSVGEFSSSL--TMSSMLNE-A---------------PESSGN--------VAVEENCTIRN
   WD 2  167-206    NE------DG-ALSVLR-----EVGS--NRSFSFDE-F---------------ERNIGQ--------SPLVRKLFRKN
   WD 3  223-264    -------------GWMR-----KLGT--VACIVDNG-E---------------GATKSSVSNSSSKTGIQQVRVHPYK
   WD 4  278-311    -------------EFEA-----HKGS--ISTMKFSF-D---------------GRYLAT--------AGEDGIVRVWQ
   WD 5  315-368    -D------VK-FDNFDI-----HDVD--PSSLYFSM-NHSSKLEPLDVPNESVGKTKVK--------RSSSTACVIFP
   WD 6  376-413    -E------KP-LHEFSG-----HSGK--ILDLSWSK-K---------------G-LLLS--------SSVDKTVRLWQ
   WD 7  414-455    LG-----RDT-CLRVYC-----HNNY--VTCVSFNPQD---------------ENHFIS--------GSIDGKVRIWE
   WD 8  456-496    VL------ACQVVDYID-----IREI--VSAVCYRP-D---------------GKGGIV--------GSMTGNCRFYN
   WD 9  511-547    NG-----------KKKS-----SGNR--IIGFEFSPSD---------------PSKLMV--------CSVDSLVHIIS
   WD10  548-588    EG------DV-ICKFKG-----LRNGGNKMSASFTS-D---------------GKHIVS--------ASEE-NVYVWN
   WD11  598-636    -K------KK-IWSSES-----FFSR--SAAIAIPW-S---------------GVKITP--------EPPLSPTQVCN
   WD12  637-682    TAGSILEMEP-KYPDDN-----GDRE--HKVPSSSP-D---------------CFSLSR--------TLFPELLKGTA
   WD13  701-741    -S------MC-KTEFKL-----LKNA--CQSMLSSP-H-------------MWGLVIVT--------AGWDGRIRTFL

   WD40 Template    TG------EC-LRTLSG-----HTSG--VTSVSFSP-D---------------GKRLVS--------GSEDGTIKVWD
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Last modified: 09 Jan 2019