Input parameters:

  Query = CmaCh05G011780 (Len=891)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh05G011780, Len=891):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFEDHLNHRKVENFVAFCIEIDSACYMGREWELSFRLGMRPWIAVAYSAPIAVFLIYPIGQGSFSDGVAGVFGGSLFSA 80  
WD40-rpts                                                                                      

Query       81 MHGSLVTSSLIRETTENESADEGYRFGQEEETYNIVAVRIYLYITFEFNSEVSSAMHRVGSAGNTSNSSRPRKEKRLTYV 160 
WD40-rpts                                                      (_____________WD 1____________)(

Query      161 LGDANDSKHSAGINCLAVPKSSIDGCDYLYTGSRDGTLKRWSLSEDVASCSATFESHVDWVNDAVIVGNNRLVSCSSDGT 240 
WD40-rpts      ___________________WD 2__________________)     (________________WD 3____________

Query      241 VKTWNCLSDGGCTKTLRQHSDYVTCLAAAEKNSNVVASGGLGGEVFIWDLEAAYAPNSKSDATDEECSNGTIASGNSLPV 320 
WD40-rpts      ____)    (_________________WD 4_________________)   (____________________WD 5___

Query      321 TSLRTISSSNSISTHPNQSHGYVPIAAKGHKESVYALAMNDSGTLLVSGGTEKVVRVWDPRTGSKTMKLRGHTDNIRALL 400 
WD40-rpts      ________________)   (_________________WD 6________________)   (_________________

Query      401 LDSTGRFCLSGSSDSMIRLWDLGQQRCVHSYAVHTDSVWALASTPSFSYVYSGGRDLSLYITDLSTRESLLLCTGEYPIQ 480 
WD40-rpts      WD 7________________)   (_________________WD 8________________)   (_____________

Query      481 QLAIHDENIWVATTDSSVRRWPAEGRNPQKVFERGGSFLAGNLSFSRARASLEGSTPVPVYKEPTFTISGAPAIVQHEIL 560 
WD40-rpts      __WD 9_______________)                                    (__________________WD1

Query      561 NNRRHILTKDAAGSVKLWEVTRGIVIEDYGKVSYEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLN 640 
WD40-rpts      0_________________)                                   (_____________________WD11

Query      641 ITGKPEDDKVNLARETLKGLMAHWLAKRKQRFGSQASANGEVLSGKDISARSLSHSRLEADGNAENDSMVYPPFEFSTVS 720 
WD40-rpts      _____________________)_______________WD12______________)                        

Query      721 PPSIITEGSQGGPWRRKITDLDGTEDEKDFPWWCLDCVLNNRLPPRENTKCSFFLHPCEGSSIQILTQGKLSAPRILRVH 800 
WD40-rpts                                                                                      

Query      801 KVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPED 880 
WD40-rpts                                                                                      

Query      881 LVLNYRVVQSS 891 
WD40-rpts                 

12 WD40-repeats found in QUERY=CmaCh05G011780 (Len=891):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   129-159      4.18  287.47  0.00829        5.0%     31.18
  WD 2:  Seg 10   160-202      6.87  398.49  0.00027       27.5%     43.40
  WD 3:  Seg 13   208-245      7.88  440.01  7.3e-05       35.0%     49.35
  WD 4:  Seg 17   250-289      7.85  439.09  7.5e-05       30.0%     55.62
  WD 5:  Seg 21   293-337      5.32  334.56  0.00193       15.0%     36.13
  WD 6:  Seg 25   341-379      9.19  494.23  1.4e-05       30.0%     53.73
  WD 7:  Seg 29   383-421      9.63  512.57  7.7e-06       32.5%     56.61
  WD 8:  Seg 33   425-463      8.58  469.05  3.0e-05       22.5%     58.41
  WD 9:  Seg 37   467-502      4.43  297.73  0.00604       12.5%     50.71
  WD10:  Seg 44   539-579      5.70  350.09  0.00119       20.0%     50.70
  WD11:  Seg 51   615-662      3.48  258.60  0.02020       12.5%     19.19
  WD12:  Seg 54   662-696      3.37  253.90  0.02334        7.5%      5.29

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  129-159    -----------NSEVSSAMHRV-GSAG----NTS------NSSRPRKEKRLT--------Y
   WD 2  160-202    -V--LGDANDSKHSAGINCLAV-PKSSIDGCDYL------YTGSRDGTLKRW--------S
   WD 3  208-245    -A--SCSATFESHVDWVNDAVI-VGNN-----RL------VSCSSDGTVKTW--------N
   WD 4  250-289    -G--GCTKTLRQHSDYVTCLAAAEKNS----NVV------ASGGLGGEVFIW--------D
   WD 5  293-337    -A--YAPNSKSDATDEECSNGT-IASG----NSLPVTSLRTISSSNSISTHP--------N
   WD 6  341-379    -G--YVPIAAKGHKESVYALAM-NDSG----TLL------VSGGTEKVVRVW--------D
   WD 7  383-421    -G--SKTMKLRGHTDNIRALLL-DSTG----RFC------LSGSSDSMIRLW--------D
   WD 8  425-463    -Q--RCVHSYAVHTDSVWALAS-TPSF----SYV------YSGGRDLSLYIT--------D
   WD 9  467-502    -R--ESLLLCTGEYP-IQQLAI-HDEN------I------WVATTDSSVRRW--------P
   WD10  539-579    PVYKEPTFTISGAPAIV-QHEI-LNNR----RHI------LTKDAAGSVKLW--------E
   WD11  615-662    TR--LGSLSVHLDTPQCFSAEM-YSAD----LNI------TGKPEDDKVNLARETLKGLMA
   WD12  662-696    -------AHWLAKRKQRFGSQA-SANG----EVL------SGKDISARSLSH--------S

   WD40 Template    TG--ECLRTLSGHTSGVTSVSF-SPDG----KRL------VSGSEDGTIKVW--------D