WDRR: WD40 Repeat Recognition
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| JobID: AX3ZK1659460078 Submitted: 2022-08-03 01:07:58 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79792057 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh01G017780 (Len=816) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh01G017780, Len=816): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MIECYRNSSIEWKPSPVVALASSADDSQVAAAREDGSLEIWLVSPGSVGWHCQLTIIGDPTSRVSSLVWCCTGSKDRPSG 80
WD40-rpts (__________________WD 1__________________)(________________________WD 2_________
Query 81 RLFSSSIDGSISEWDLFDLTQKVVLESIGFSIWQIAAAPCNSREVDSEVKPQDMQNGHLTDNESDFQDCSESEDDSNSSE 160
WD40-rpts ______________) (_______________WD 3______________) (_____________
Query 161 LHVQSSDENPSLAIACDDGCVRIYNICDAEEFIYKRSLPRVSGRVLSVTWSNDAERIFSGSSDGFIRCWNISLGHEIYRI 240
WD40-rpts ____WD 4________________)(____________________WD 5___________________)
Query 241 TAGLGGLGSGPELCVWSLLYLRCGTLVSADSTGSVQFWNGNHGTLLQAHTLHKGDVNKLAATPNQNRVYSAGSDGQVILY 320
WD40-rpts (________________WD 6________________) (_________________WD 7________________
Query 321 KLSSENVASHDDECSSEVIKKWIYVGHVRSHTHDIRALTVAVPICREAAELPQDDEVKRARNKKPNEFSYRKWAHLGVPM 400
WD40-rpts ) (_________________WD 8___
Query 401 LISGGDDAKLFAYSAQEFTKFSPHDICPAPQRVPMQLVLNTIFNQAPLLLVQAAYSLDILCIRPKSGSFRDMACGPSKGL 480
WD40-rpts _____________) (______________WD 9_____________)
Query 481 AKADLLVRVKSKASRKIICSSISNSGKLFAYSDHSKPNLYELKKSGGSKCSWTVNKRQLPNMLPFAHSMVFSFDSSRLII 560
WD40-rpts (________________WD10________________) (_____________________WD11___________
Query 561 AGYDKRIYVVDMGSLKVIHSFTPFRELQDDALPPAEPPITKIFTSSDGQWLAAVNCFGDIYVFNMEIMRQHWFISRLDGA 640
WD40-rpts __________) (___________________WD12__________________) (___________
Query 641 SITAGGFPQWNNNVLVVTTSTNQVYAFDVEAKQLGDWSMRHTQALPKRFQEFPGEVIGLSFPPSATSLPVIVYSSRAMCL 720
WD40-rpts ______WD13_________________) (__________________WD14_________________
Query 721 IDFKMSVDQDDEYVMISGQDSMVKSLRGTPVNGKLKRKLRDCQTDGRKNFEIFPFRDPVLLIGHLSKTSVLIIEKPWLEV 800
WD40-rpts )
Query 801 ANTFDAPPVHRHIYGT 816
WD40-rpts
 14 WD40-repeats found in QUERY=CmaCh01G017780 (Len=816): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-42 8.48 465.01 3.4e-05 27.5% 57.63 WD 2: Seg 5 43-95 6.75 393.37 0.00031 37.5% 54.91 WD 3: Seg 9 99-133 5.26 332.08 0.00208 15.0% 37.94 WD 4: Seg 13 147-185 8.19 452.81 4.9e-05 17.5% 48.12 WD 5: Seg 16 186-230 8.79 477.57 2.3e-05 37.5% 47.78 WD 6: Seg 21 242-279 6.48 382.35 0.00044 27.5% 39.75 WD 7: Seg 24 283-321 8.75 476.17 2.4e-05 22.5% 56.07 WD 8: Seg 31 376-414 6.04 364.13 0.00077 10.0% 47.48 WD 9: Seg 35 431-463 5.08 324.53 0.00263 12.5% 46.52 WD10: Seg 39 484-521 4.10 283.87 0.00927 15.0% 50.23 WD11: Seg 43 524-571 7.66 430.96 9.7e-05 30.0% 48.17 WD12: Seg 48 582-624 7.38 419.33 0.00014 25.0% 43.90 WD13: Seg 51 629-668 4.76 311.09 0.00399 12.5% 55.40 WD14: Seg 55 681-721 3.94 277.26 0.01137 15.0% 33.72Multiple sequence alignment of 14 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-42 MI---E--------CY-RNSSIEWKPSPVVALASSADDS------Q-VAAAREDGSLEIWL WD 2 43-95 VS---P-GSVGWHCQL-T--IIGDPTSRVSSLVWCCTGSKDRPSGR-LFSSSIDGSISEWD WD 3 99-133 -L---T--------QK-V--VLESIGFSIWQIAAAPCN-----------SREVDSEVKPQD WD 4 147-185 -Q---D--------CS-E--SEDDSNSSELHVQSSDENP------S-LAIACDDGCVRIYN WD 5 186-230 IC---D---AEEFIYK-R--SLPRVSGRVLSVTWSNDAE------R-IFSGSSDGFIRCWN WD 6 242-279 AG------------LG-G--LGSGPELCVWSLLYLRCGT--------LVSADSTGSVQFWN WD 7 283-321 -G---T--------LL-Q--AHTLHKGDVNKLAATPNQN------R-VYSAGSDGQVILYK WD 8 376-414 -E---V--------KR-A--RNKKPNEFSYRKWAHLGVP------M-LISGGDDAKLFAYS WD 9 431-463 ---------------------QRVPMQLVLNTIFNQAPL------L-LVQAAYSLDILCIR WD10 484-521 -D---L--------LV-R--VKSKASRKIICSSISNSGK------L-FAYSD-HSKPNLYE WD11 524-571 KS---GGSKCSWTVNK-R--QLPNMLPFAHSMVFSFDSS------R-LIIAGYDKRIYVVD WD12 582-624 TPFREL--------QD-D--ALPPAEPPITKIFTSSDGQ------W-LAAVNCFGDIYVFN WD13 629-668 -R---Q--------HW-F--ISRLDGASITAGGFPQWNN------NVLVVTTSTNQVYAFD WD14 681-721 HT---Q--------ALPK--RFQEFPGEVIGLSFPPSAT------S-LPVIVYSSRAMCLI WD40 Template TG---E--------CL-R--TLSGHTSGVTSVSFSPDGK------R-LVSGSEDGTIKVWD |
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