Input parameters:

  Query = CsaV3_2G016400 (Len=564)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G016400, Len=564):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLISQNVAVVSSIEKVMEENTLSPSSPPRNADASDVDKSGLDTSRAKKRKKEHKIEDKQLVKEQKEMMKLENFLFGSLY 80  
WD40-rpts                                                                                      

Query       81 SPVEFGKDEEQNGFNSEEKTPALYIMDRSADHSLSAYEDDYGLLDESTNKEEHQQRKPVWVDEEEEKATVNITNVSRLRK 160 
WD40-rpts                 (______________________WD 1______________________)                   

Query      161 LRKEEHENSISGSEYVSRLRAQHAKINPGTEWAQLDAQSRGDDDLSSDDENAVALAGGYDNVDSIDDILRTSEKLVVKSG 240 
WD40-rpts                                  (_________________WD 2________________)             

Query      241 GKLMPGLLGYSRLVDANAEEPSNGPINSVQFHRNSQLLLATGLDRKLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGS 320 
WD40-rpts                     (_______________WD 3_______________)     (_________________WD 4__

Query      321 QVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEAFEISPDSSTIAFMGNEGYILLVSTKTKELIGTLKMNGTVRSLA 400 
WD40-rpts      ______________)      (_________________WD 5________________)   (________________

Query      401 FADDGRQLLSSGGDGQIYHWDLRTRTCIHKAVDEGCINGTALCTSPNGLFAAGSNSGIVNIYNRQEFLGGKKKPLKAIEN 480 
WD40-rpts      WD 6________________)   (_________________WD 7________________)        (________

Query      481 LTTKVDFLKFNHDAQILAICSRMKQSSLKLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKVLLYKLHH 560 
WD40-rpts      __________WD 8_________________)      (_________________WD 9________________)   

Query      561 YHHA 564 
WD40-rpts          

9 WD40-repeats found in QUERY=CsaV3_2G016400 (Len=564):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    92-141      4.05  281.94  0.00984       22.5%     -4.48
  WD 2:  Seg  2   189-227      8.09  448.66  5.6e-05       17.5%     32.12
  WD 3:  Seg  7   256-291      7.67  431.31  9.6e-05       12.5%     43.53
  WD 4:  Seg 10   297-335      8.02  446.06  6.1e-05       15.0%     57.05
  WD 5:  Seg 14   342-380      7.02  404.74  0.00022       12.5%     48.60
  WD 6:  Seg 18   384-421      8.10  449.27  5.5e-05       37.5%     56.86
  WD 7:  Seg 22   425-463      5.96  360.73  0.00086       20.0%     52.98
  WD 8:  Seg 26   472-512      6.85  397.82  0.00027       20.0%     54.01
  WD 9:  Seg 30   519-557      7.66  431.21  9.6e-05       15.0%     37.97

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   92-141    NGFNSEEKTPALYIMD-RSADHSLSAYEDDYGLLDES--TNKEEHQQRKPVWV
   WD 2  189-227    -G-----TEWAQLDAQ-SRGDDDLSSDDENAVALAGG--YD-----NVDSIDD
   WD 3  256-291    ---------ANAEEPS-NGPINSVQFHRNSQLLLATG--LD-----RKLRFFQ
   WD 4  297-335    -N-----TKIQSIFLE-DCPIRKASFLPDGSQVIIAG--RR-----KFFYSLD
   WD 5  342-380    -D-----KIGPLVGRE-EKSLEAFEISPDSSTIAFMG--NE-----GYILLVS
   WD 6  384-421    -K-----ELIGTL-KM-NGTVRSLAFADDGRQLLSSG--GD-----GQIYHWD
   WD 7  425-463    -R-----TCIHKAVDEGCINGTALCTSPNG-LFAAGS--NS-----GIVNIYN
   WD 8  472-512    -K-----KPLKAIENL-TTKVDFLKFNHDAQILAICSRMKQ-----SSLKLIH
   WD 9  519-557    -F-----SNWPPPKKN-LQYPSCLDFSPEGGYMAVGN--AA-----GKVLLYK

   WD40 Template    TG-----ECLRTLSGH-TSGVTSVSFSPDGKRLVSGS--ED-----GTIKVWD