Input parameters:

  Query = CmaCh20G001710 (Len=1482)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh20G001710, Len=1482):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 FPEFNNPIAMVPPNRSDSGDRLSTGINSTPAAAPAVGSPGDFGGGAEKSKGCCGFRERLKRHREEVAGKVTVPEKWGKEE 80  
WD40-rpts                                                                                      

Query       81 LLKDWIDYSAFDRILAAGRIASARASLVAEGRRVESSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKD 160 
WD40-rpts                                                                                      

Query      161 KRFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGP 240 
WD40-rpts                                                                                      

Query      241 GLNKAGKCVHDFSHSEVTLYLKQSVLFVVRTNMDIYIAITGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGN 320 
WD40-rpts                                                                                      

Query      321 VAMEEKQVFQNVQMSVNFLVSLLKKNWQNVSEMLVPEEYYGEGISSLLRNFQNLEQYSRVLPDSYLQGLVLVLILRFYVE 400 
WD40-rpts                                                                                      

Query      401 NFVSYSKCLDVFLSVVSGWAFVLSCFILLENYELTRNSLRGEGLLLCSDLEMIAEKPSWVRHEGTQIFSIDVQPGGLRFA 480 
WD40-rpts               (_________________WD 1_________________)        (_______________WD 2___

Query      481 TGGGDHKVRIWNVKSVGRSLEDDDSNQRLLATLRDHFGSVNCVRWAKHGRYVASGSDDQTILVHEKKPGSGTTEFGSGEP 560 
WD40-rpts      ___________)              (_________________WD 3________________)               

Query      561 PDVENWKVAMTLRGHTADVVDLNWSPDDSTLASGSLDNTVHIWNMSNGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDK 640 
WD40-rpts           (_________________WD 4________________)   (_________________WD 5___________

Query      641 TVIIWRTSDWSLAHRTDGHWTKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWSATFDFLGHNAPVIVVKF 720 
WD40-rpts      _____)          (________________WD 6________________)                          

Query      721 NHSMFRRNLTNANEMKAVPVGWTNGASKIGGKESPSYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG 800 
WD40-rpts                      (________________WD 7_______________)(___________________WD 8___

Query      801 YSLFACSLDGSVATFHFEVKEIGQRLPDVELDEIKRSRYGDVRGRQVNLAETPAQLMLEAASLRQVSSKKVVSESQLNQT 880 
WD40-rpts      _______________)   (_______________________WD 9_______________________)         

Query      881 LSKSSIDARDASKTLEAQVDDSKKSGGAGGDGLNKVSSASQKISSPVKQREYRRPDGRKRIIPEAVGGPVLQENKSGGIQ 960 
WD40-rpts                                                                                      

Query      961 SSNALDFPSMSSDQKKDNNGVAAPECVRESSMRGMPSKRTDLKERTGVTARATITDSLVIEKVPLSVVNDANIVMDHSGN 1040
WD40-rpts                                                                                      

Query     1041 LKTSNSLATCSSVLSIRVFDKKEGEYNEPICLEARPKENAANDIIGAGNTSMLKETVISCTNGSRNLWSDRVSGKVTVLA 1120
WD40-rpts                                                                  (_________________WD

Query     1121 GNANFWAVGCEDGCLQVYTKCGRRSMPTMMIGSAATFIDCDDSWKLLLVTRKGSLYVWDLFNRSCLLHDSLASLIPLNPN 1200
WD40-rpts      10________________)                                                             

Query     1201 SSTKDSGTIKVISAKLSKSGSPLVVLATRHAFLFDTNLKCWLRVADDCFPASNFSSSWNLGSIQSGELAALQVDIRKYLA 1280
WD40-rpts                                                                                      

Query     1281 RKPGWSRVTDDGMQTRAHLETQMASSLALKSPNEYRQWLLSYIRFLAREADESRLREVCESLLGPPTGMAGDASADSKNQ 1360
WD40-rpts                                                                                      

Query     1361 AWDPCVLGMRKHKLLREDILPAMASNRKVQRLLNEFMDLLSEYENVENNVEPKASLPAASSPLEPDHEQFASHQADKMET 1440
WD40-rpts                                                                                      

Query     1441 DPTVIHPKDSSKLVNYQTSFAPSVDLGQPVKDPVNLASEAKD 1482
WD40-rpts                                                

10 WD40-repeats found in QUERY=CmaCh20G001710 (Len=1482):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   410-449      3.81  272.06  0.01335       15.0%     38.45
  WD 2:  Seg 11   458-492      6.94  401.21  0.00024       17.5%     45.47
  WD 3:  Seg 14   507-545      8.27  456.24  4.4e-05       35.0%     45.92
  WD 4:  Seg 17   566-604      8.73  475.16  2.5e-05       40.0%     54.32
  WD 5:  Seg 21   608-646      9.52  507.90  8.9e-06       37.5%     55.41
  WD 6:  Seg 26   657-694      4.38  295.59  0.00645       15.0%     37.37
  WD 7:  Seg 31   737-773      5.75  352.08  0.00112       30.0%     42.29
  WD 8:  Seg 34   774-816      7.34  417.93  0.00014       30.0%     58.40
  WD 9:  Seg 38   820-871      3.65  265.56  0.01631       12.5%     29.55
  WD10:  Seg 46  1101-1139     4.85  315.01  0.00353       20.0%     39.05

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  410-449    -DV---FLSVVSGWA-------------FVLSCFI--LLENYELTRNSLRGEGLLLCSD
   WD 2  458-492    SW--------VRHEG-------------TQIFSID--VQPGGLRF-ATGGGDHKVRIWN
   WD 3  507-545    -QR---LLATLRDHF-------------GSVNCVR--WAKHGRYV-ASGSDDQTILVHE
   WD 4  566-604    -WK---VAMTLRGHT-------------ADVVDLN--WSPDDSTL-ASGSLDNTVHIWN
   WD 5  608-646    -GI---CTAVLRGHS-------------SLVKGVA--WDPIGSFI-ASQSDDKTVIIWR
   WD 6  657-694    DGH---W--TKSLGS-------------TFFRRLG--WSPCGHFI-TTTHGFQKPRHSA
   WD 7  737-773    A--------VPVGWT-------------NGASKIGGKESPSYNVI-AIGSQDRTITVWT
   WD 8  774-816    TASPRPLFVAKHFFT-------------QSVVDLS--WSPDGYSL-FACSLDGSVATFH
   WD 9  820-871    -KE---IGQRLPDVELDEIKRSRYGDVRGRQVNLA--ETPAQLML-EAASLRQVSSKKV
   WD10 1101-1139   TNG----SRNLWSDR-------------VSGKVTV--LAGNANFW-AVGCEDGCLQVYT

   WD40 Template    TGE---CLRTLSGHT-------------SGVTSVS--FSPDGKRL-VSGSEDGTIKVWD