Input parameters:

  Query = CmaCh11G002340 (Len=972)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G002340, Len=972):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIRSVKLREAHKAASNGKASFCSVLWDQQASHIVTASSSESAISIHDSLLPSNNPKIIHHHREGVTALALSPNSTCLAS 80  
WD40-rpts              (_________________WD 1_________________)    (_________________WD 2______

Query       81 GSMDRSVKLYKFPGGEFETNITRFTLPIRTLAFNKSGSLLAAAGEDDGIKLINTIDGSIARVLKGHKAAVTGLAFDPNSE 160 
WD40-rpts      __________)   (_________________WD 3________________)   (_________________WD 4__

Query      161 YMASVDSFGTVIFWELQSGSIIHNLKGIAPSTGTDPSVMNVLCWSPDGEMLAVPGLRNDVVMYDRDTAEKLFSLRGDHTQ 240 
WD40-rpts      ______________)   (____________________WD 5____________________)   (____________

Query      241 PICFLSWSPNGKYMATSSLDRQILIWDVDQKLDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKSPTE 320 
WD40-rpts      _____WD 6_________________)(__________________WD 7_________________)(___________

Query      321 DIPKLQSRNSNGLLLFDEEDEEPSEHGNLSDLGEDSLYESEFTTRKRLRKHSTNEEILDEADSEDFSLLPKSESYKMSRR 400 
WD40-rpts      ______WD 8_________________)                                                    

Query      401 VKKYKPDNIDEGDINIATYSKLKLREAFQPGATPLQPGKKRFLCYNMLGSITTFEHDGYSHIEIDFHDTGSGPRVPSMND 480 
WD40-rpts                                                                                      

Query      481 HFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFGSWANNSEWSMRFDGEEVKVVAVGTRWVAAFTSLNYLRIFTDGGLQ 560 
WD40-rpts                                                                                      

Query      561 KHILSLDGPVVTASGFKDELAFVTHSSTCLPSNDQMLEFRILNISNETQLLRGHLPLTPGSHLAWFGFSEEGKLSSYDSK 640 
WD40-rpts           (________________WD 9________________)(___________________WD10_____________

Query      641 GVLRVFTSQYGGSWVPLFSARKERKSDEKYWVVGLNTSKLFCVICKNSESYPQVTPKPILTLLNLSFPLALSDLGAEALE 720 
WD40-rpts      ______)                                                                         

Query      721 NEFMMNNMHLTQIHGRMEEMALLGLYDTELDDEAFCIEAAQDRCILRLIASCCNGDKLVRASELVKLLSLEKSVKGAIKL 800 
WD40-rpts                                                                                      

Query      801 VTALKLPNLAERFNAILEERLLNEAKGTMETTTLSRSNCSGSVLPNAGSSSSTLNCAVKGRSSEVTRPSSPKGPILSLSA 880 
WD40-rpts                                                                                      

Query      881 PLFTKKLKSDGAKFNDGRTEDKQSSGVVKKGTENSGGDTNVAAADVKKAVSLSKIESTTLETNQHLNSCNSQKVKAEDVN 960 
WD40-rpts                                                                                      

Query      961 QQAQCTRPRIRS 972 
WD40-rpts                  

10 WD40-repeats found in QUERY=CmaCh11G002340 (Len=972):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     9-48       6.21  371.12  0.00062       20.0%     49.65
  WD 2:  Seg  6    53-91       7.51  424.88  0.00012       30.0%     51.24
  WD 3:  Seg 10    95-133      7.21  412.62  0.00017       25.0%     59.32
  WD 4:  Seg 14   137-175      9.06  488.95  1.6e-05       32.5%     54.74
  WD 5:  Seg 18   179-224      5.27  332.56  0.00205       25.0%     55.61
  WD 6:  Seg 22   228-267      7.59  428.32  0.00011       40.0%     58.50
  WD 7:  Seg 26   268-308      5.82  355.15  0.00102       17.5%     54.18
  WD 8:  Seg 30   309-348      3.63  264.79  0.01669       10.0%     25.03
  WD 9:  Seg 48   566-603      2.91  234.78  0.04185       17.5%     25.85
  WD10:  Seg 51   604-647      3.71  267.93  0.01516       30.0%     48.88

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     -REAHK-AASN-G-------KASFCSVLWDQQASHIVTASSSESAISIHD
   WD 2   53-91     -SNNPK-IIHH-H-------REGVTALALSPNSTCLA-SGSMDRSVKLYK
   WD 3   95-133    -GEFET-NITR-F-------TLPIRTLAFNKSGSLLA-AAGEDDGIKLIN
   WD 4  137-175    -GSIAR-VLKG-H-------KAAVTGLAFDPNSEYMA-SVDSFGTVIFWE
   WD 5  179-224    -GSIIH-NLKG-IAPSTGTDPSVMNVLCWSPDGEMLA-VPGLRNDVVMYD
   WD 6  228-267    -AEKLF-SLRGDH-------TQPICFLSWSPNGKYMA-TSSLDRQILIWD
   WD 7  268-308    VDQKLDIDRQK-F-------DERICCMAWKPIGNALA-VIDVMGKYGVWE
   WD 8  309-348    SVVPSS-MKSP-T-------EDIPKLQSRNSNGLLLF-DEEDEEPSEHGN
   WD 9  566-603    LDGPVV-TASG-F-------KDELAFVTHSSTC--LP-SNDQMLEFRILN
   WD10  604-647    ISNETQ-LLRG-H--LPLTPGSHLAWFGFSEEGK-LS-SYDSKGVLRVFT

   WD40 Template    TGECLR-TLSG-H-------TSGVTSVSFSPDGKRLV-SGSEDGTIKVWD