Input parameters:

  Query = CsaV3_1G045470 (Len=383)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G045470, Len=383):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKRPPPDPVAVLRGHRASVMDVSFHPSEPLLFSGSADGELRIWDTAQNRTVSSAWVHSAAHGIISVACSRSIGTNRVVS 80  
WD40-rpts           (_________________WD 1_________________)   (___________________WD 2________

Query       81 QGRDGTVKCWDIDDRTLSRVPTVSIKTNAYHFCKLSLVKQPSDFSSHNDGPNCINDRDEKPVEATILGCSGDKAQGISTE 160 
WD40-rpts      __________)(____________________WD 3___________________)          (_____________

Query      161 HSYRSEVDGLKYVAVSGEQSSEVEIWDLNAGERLLRLPPNSEGDCPNISTKDRGLCMAVQAFLPSKSQGFLNVLSGYEDG 240 
WD40-rpts      _____WD 4_________________)   (_________________________WD 5____________________

Query      241 SMLWWDLRNPRVPLASVKCHVEPVLSICVDGSCHGAISGAADEKVVMFSLDHSTGTCLVKREITLERPGIAKVSIRSDDK 320 
WD40-rpts      _____)    (_________________WD 6________________)       (_________________WD 7__

Query      321 IVATAGWDHRVRIYNYRKGNPLAILKYHQALCNAVSYSEDCKLMASASEDRTVALWELYPPRT 383 
WD40-rpts      ______________)   (_________________WD 8________________)      

8 WD40-repeats found in QUERY=CsaV3_1G045470 (Len=383):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-45      10.34  541.66  3.1e-06       40.0%     55.54
  WD 2:  Seg  5    49-91       7.90  440.79  7.1e-05       30.0%     56.83
  WD 3:  Seg  9    92-136      3.33  252.39  0.02444       12.5%     46.47
  WD 4:  Seg 14   147-187      5.45  339.88  0.00163       27.5%     27.06
  WD 5:  Seg 18   191-246      5.46  340.25  0.00162       35.0%     56.62
  WD 6:  Seg 22   251-289      8.21  453.61  4.8e-05       17.5%     58.22
  WD 7:  Seg 26   297-335      8.39  461.05  3.8e-05       17.5%     56.67
  WD 8:  Seg 30   339-377      9.95  525.53  5.1e-06       37.5%     55.52

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-45     PPD------PVAVLRGHRAS-------------VMDVSFHPSEP----L--LFSGSADGELRIWD
   WD 2   49-91     -NR------TVSSAWVHSAA---------HGIISVACSRSIGTN----R--VVSQGRDGTVKCWD
   WD 3   92-136    IDDRTLSRVPTVSIKTNAYH-------------FCKLSLVKQPS----D--F-SSHNDGPNCIND
   WD 4  147-187    LG-------CSGDKAQGIST-------------EHSYRSEVDGL----KYVAVSGEQSSEVEIWD
   WD 5  191-246    -GE------RLLRLPPNSEGDCPNISTKDRGLCMAVQAFLPSKSQGFLN--VLSGYEDGSMLWWD
   WD 6  251-289    -RV------PLASVKCHVEP-------------VLSICVDGSCH----G--AISGAADEKVVMFS
   WD 7  297-335    -CL------VKREITLERPG-------------IAKVSIRSDDK----I--VATAGWDHRVRIYN
   WD 8  339-377    -GN------PLAILKYHQAL-------------CNAVSYSEDCK----L--MASASEDRTVALWE

   WD40 Template    TGE------CLRTLSGHTSG-------------VTSVSFSPDGK----R--LVSGSEDGTIKVWD