WDRR: WD40 Repeat Recognition
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| JobID: A4RGD1659502151 Submitted: 2022-08-03 12:49:11 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79749840 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G006690 (Len=448) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G006690, Len=448): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEDSSETPIFNIFHSSFPSPETDSSYLMEISRSQSFFQDLSSREFNGFRVRKRPRFSADIALSFKEVGTLAVEHDGDQTP 80
WD40-rpts (_________________WD 1________________) (____________
Query 81 PLAVSFCKTLKNSHIFALSDEDGFVSLFNTCSRFSLFSSHEENSEKSRVCEWEAHRNAVFDVCWSKDDTQMITASGDQSM 160
WD40-rpts ______WD 2__________________) (_________________WD 3_____________
Query 161 KLWDVQEMKCIGILRGHKGSVKSISSHPTNHDIIVSGSRDGSFALWDLRTSSCCKVGSEELSLQATAVVKGAHLSSHAKR 240
WD40-rpts ___) (_________________WD 4_________________) (__
Query 241 IRRQKSASKSITSVLYLQDELTVATAGAVDSVVKFWDTRNLKNATTRCQPKSSDKDTRLHGISSLSQDANGAFLSTSCMN 320
WD40-rpts _______________WD 5_________________) (_________________WD 6___________
Query 321 NRIYLYNVLQLEKGPVKSFSGCQIDSFFVKSVISPDASYLLSGSTDGNAHVWQVDKPHEDPITLAKHSGEVSAVDWSSFE 400
WD40-rpts ______) (__________________WD 7_________________) (_________________WD 8_
Query 401 VGKFVTSSDDFTVRIWNCQNNSCSSSKRPTSGNRKRIMAMPTIEQAKD 448
WD40-rpts ________________)
 8 WD40-repeats found in QUERY=CmaCh14G006690 (Len=448): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-39 3.94 277.36 0.01133 15.0% 23.52 WD 2: Seg 6 68-109 7.40 420.16 0.00014 20.0% 54.84 WD 3: Seg 10 126-164 8.65 472.16 2.7e-05 25.0% 54.18 WD 4: Seg 14 168-207 9.22 495.48 1.3e-05 40.0% 56.36 WD 5: Seg 20 238-277 8.09 448.90 5.5e-05 25.0% 53.35 WD 6: Seg 25 288-327 9.22 495.41 1.3e-05 15.0% 40.23 WD 7: Seg 28 333-373 7.73 433.99 8.8e-05 35.0% 54.12 WD 8: Seg 32 378-417 8.24 454.92 4.6e-05 30.0% 53.21Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-39 MEDSSETPIFNI--FHSSFPSPE---T-DSSYLM-EISRSQSF-FQD WD 2 68-109 -GTLAVEHDGDQ--TPPLAVSFCKTLK-NSHIFA-LSDEDGFVSLFN WD 3 126-164 -KSRVCEWEAHR--NAVFDVCWS---K-DDTQMI-TASGDQSMKLWD WD 4 168-207 -MKCIGILRGHK--GSVKSISSH---PTNHDIIV-SGSRDGSFALWD WD 5 238-277 -AKRIRRQKSAS--KSITSVLYL---Q-DELTVATAGAVDSVVKFWD WD 6 288-327 CQPKSSDKDTRL--HGISSLSQD---A-NGAFLS-TSCMNNRIYLYN WD 7 333-373 -KGPVKSFSGCQIDSFFVKSVIS---P-DASYLL-SGSTDGNAHVWQ WD 8 378-417 -HEDPITLAKHS--GEVSAVDWS---SFEVGKFV-TSSDDFTVRIWN WD40 Template TGECLRTLSGHT--SGVTSVSFS---P-DGKRLV-SGSEDGTIKVWD |
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