WDRR: WD40 Repeat Recognition
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| JobID: 9XTN91659501279 Submitted: 2022-08-03 12:34:39 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79750842 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G004410 (Len=648) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G004410, Len=648): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 RLSFTRIVLHRYSFLEASFTEPRTTDAATPLRSSFCPINPSSSDHDGSCDKMIELNALENRIVVLDFIVYWKLNFWYLDV 80
WD40-rpts
Query 81 PPFSMDLRDNSERCVLTVDADAVEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRV 160
WD40-rpts (________________________WD 1_________
Query 161 MSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREA 240
WD40-rpts _______________) (_________
Query 241 RQTMDDVPFLLLYHGTDYNGGISLTLPSLLSHLVRHFRTSYISSLYPLLFQQFGVHFSENLLKFPLLVYTFASDTTTEPS 320
WD40-rpts _______WD 2________________) (_________________WD 3________________) (___
Query 321 KSHPGCPPFALEIKMTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIRLFDINSN 400
WD40-rpts ______________WD 4________________) (________________WD 5________________) (
Query 401 SPIMSYDSHTNNVMSVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDL 480
WD40-rpts _________________WD 6________________) (________________WD 7________________)
Query 481 TANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLLRGTQTMTNFEPLHKLQAHKGYILKCLLSPEFCEPHR 560
WD40-rpts (_________________WD 8_________________) (___________________WD 9____
Query 561 YLATASSDSTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDTTARLWSMSTGKEMKVYQGHHKATICCALH 640
WD40-rpts ______________) (_________________WD10________________)
Query 641 DGAEPSSS 648
WD40-rpts
 10 WD40-repeats found in QUERY=CmaCh14G004410 (Len=648): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 6 123-176 5.60 345.87 0.00136 17.5% 33.97 WD 2: Seg 13 231-268 3.12 243.73 0.03186 5.0% 5.18 WD 3: Seg 16 272-310 7.96 443.53 6.5e-05 10.0% 51.76 WD 4: Seg 20 317-355 8.80 478.08 2.2e-05 20.0% 51.91 WD 5: Seg 24 359-396 8.29 457.10 4.3e-05 27.5% 55.91 WD 6: Seg 28 400-438 10.60 552.41 2.2e-06 45.0% 56.75 WD 7: Seg 32 442-479 8.31 458.05 4.2e-05 32.5% 57.34 WD 8: Seg 36 483-522 7.70 432.73 9.2e-05 27.5% 55.27 WD 9: Seg 40 533-575 7.68 431.99 9.4e-05 30.0% 52.82 WD10: Seg 44 579-617 9.70 515.47 7.0e-06 35.0% 58.12Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 123-176 GDGDIILEPYEGME-FESEDAAKIFYDKYARQVGFVMR----VMSCRRSEKDGRILARR WD 2 231-268 -H--PLVVSPREAR-QTMD------------DVPFLLL----YHGT-DYNGGISLTLPS WD 3 272-310 -H--LVRHFRTSYI-SSLY------------PLLFQQF----GVHFSENLLKFPLLVYT WD 4 317-355 -T--EPSKSHPGCP-PFAL------------EIKMTQP----SVILATASYDHTIRFWE WD 5 359-396 -G--RCYRTIQYPD-SQVN------------RLEITPD----KRYLAAAG-NPHIRLFD WD 6 400-438 -N--SPIMSYDSHT-NNVM------------SVGFQCD----GNWMYSGSEDGTVKIWD WD 7 442-479 -P--GCQREYESRA-A-VN------------TVVLHPN----QTELISGDQNGNIRVWD WD 8 483-522 -N--SCSCELVPEVDTAVR------------SLTVMWD----GSLVVAANNHGTCYVWR WD 9 533-575 -F--EPLHKLQAHK-GYIL------------KCLLSPEFCEPHRYLATASSDSTVKIWN WD10 579-617 -F--TLEKTLIGHQ-RWVW------------DCVFSVD----GAYLITASSDTTARLWS WD40 Template TG--ECLRTLSGHT-SGVT------------SVSFSPD----GKRLVSGSEDGTIKVWD |
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