Input parameters:

  Query = FBpp0076415 (Len=377)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0076415, Len=377):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIYHTKSDELFLIERLFESSLVAIVSQRAPRKL 80  
WD40-rpts      (________________WD 1________________) (____________________WD 2________________

Query       81 KVCHFKKQSEICNYSYANTILAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSEHCYLAYPGSV 160 
WD40-rpts      ___)(________________WD 3________________)(_____________________WD 4____________

Query      161 TAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIATASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTC 240 
WD40-rpts      ________)   (_________________WD 5_________________)(____________________WD 6___

Query      241 AEYLVSSSNTETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVTDVFSQGRAFASVTLPEAGVR 320 
WD40-rpts      ________________)  (_________________WD 7________________)          (___________

Query      321 RMCAIATIQKQLRLLIASQDGYLYVYSIPTVEGAECQLIKRHDLRLEDHYAMDIKGA 377 
WD40-rpts      ______WD 8________________)                              

8 WD40-repeats found in QUERY=FBpp0076415 (Len=377):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       5.52  342.64  0.00150       15.0%     39.20
  WD 2:  Seg  4    40-84       4.41  296.90  0.00619       12.5%     41.47
  WD 3:  Seg  8    85-122      3.21  247.35  0.02852        2.5%     39.90
  WD 4:  Seg 12   123-169      3.74  269.35  0.01451       17.5%     42.33
  WD 5:  Seg 16   173-212      7.95  443.06  6.6e-05       27.5%     56.91
  WD 6:  Seg 20   213-257      6.62  388.09  0.00037       27.5%     43.59
  WD 7:  Seg 23   260-298      2.81  230.60  0.04751       12.5%     16.01
  WD 8:  Seg 26   309-347      6.02  363.23  0.00079       15.0%     52.51

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     -M-----M-----S-----LLGRT-DVDAGEVFVNFNQNITSLAVAT-S--GG-YSLYS
   WD 2   40-84     GSVDSTLD-----K-----IYHTK-SDELFLIERLFESSLVAIVSQRAP--RK-LKVCH
   WD 3   85-122    FK-----K-----Q-----SEICNYSYANTILAVKLNRERLIVCL---E--ES-LYIHN
   WD 4  123-169    IQ-----DMKVVHT-----IRDTP-CNPQGLCALSSSSEHCYLAYPGSVTAGE-VQIFD
   WD 5  173-212    -L-----H-----A-----KTMIP-AHDTPLAALAFSPSGTEIATASER--GTVIRVFS
   WD 6  213-257    SQ-----D-----GSRLFELRRGL-KRCVSIVSLSFSTCAEYLVSSSNT--ET-VHIFR
   WD 7  260-298    -R-----S-----A-----TETAE-GHGSKQSSDDWMGYSFFRFLSKTV--TS-YLPTQ
   WD 8  309-347    -F-----A-----S-----VTLPE-AGVRRMCAIATIQKQLRLLIASQD--GY-LYVYS

   WD40 Template    TG-----E-----C-----LRTLS-GHTSGVTSVSFSPDGKRLVSGSED--GT-IKVWD