Input parameters:

  Query = BGIBMGA002361 (Len=482)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (BGIBMGA002361, Len=482):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFETGLTDVWTLDFSPDGKHVISGSNAGKILIFGVESGKQEQVLDTRGKFTLSVAYSPDGKYIASGALDGIINIFDVAQG 80  
WD40-rpts      (______________WD 1______________)   (_________________WD 2________________)   (

Query       81 KLVHTLEGHAMSIRSLCFSPDSQLLLTGSDDGHMKLYDVVHANLAGTLSGHASWVLSVAFSPDGKRFVSGSADRTVRVWD 160 
WD40-rpts      _________________WD 3________________)   (_________________WD 4________________)

Query      161 LDSMQCQHTFKEHNDQVWGVKFNAESNKIISVSEDKGPSKDYIVTGGLDNLVKVWSYENNKLELLHTLEGHEMPVVSVAV 240 
WD40-rpts         (_________________WD 5________________)                   (_________________W

Query      241 SPDGETIASTSLDSSLIIWDLLDGQKIREIQTDSSDMWKIVFSPDGSQVATGGHTGKVTVYGIINGTVDKVLDTRGKFIM 320 
WD40-rpts      D 6________________)   (_________________WD 7________________)   (______________

Query      321 SVAWSPDGRYIASGAEGGSVYLFDVSQGKMLHTIEAHAQAVRSLAFSPKTKLLASASNDGYVNVYNIESAALQNKLDHKC 400 
WD40-rpts      ___WD 8________________)   (_________________WD 9________________)  (___________

Query      401 WAVSVCFSPDGQRMATSAADGSIRVVLLEEFRVLHTFEEHTHIVCGVQFNADGSKLVSVSKDKSINIYECPIPPKSAKKV 480 
WD40-rpts      ______WD10________________)   (_________________WD11________________)           

Query      481 KK 482 
WD40-rpts        

11 WD40-repeats found in QUERY=BGIBMGA002361 (Len=482):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       8.10  449.40  5.5e-05       30.0%     43.01
  WD 2:  Seg  4    38-76       9.61  511.52  7.9e-06       37.5%     58.61
  WD 3:  Seg  8    80-118     10.38  543.26  3.0e-06       42.5%     59.17
  WD 4:  Seg 12   122-160     11.06  571.40  1.2e-06       62.5%     57.85
  WD 5:  Seg 16   164-202      6.07  365.41  0.00074       25.0%     33.33
  WD 6:  Seg 21   222-260      9.71  515.70  7.0e-06       45.0%     55.89
  WD 7:  Seg 25   264-302      9.29  498.49  1.2e-05       27.5%     58.65
  WD 8:  Seg 29   306-344      9.42  503.97  1.0e-05       32.5%     58.66
  WD 9:  Seg 33   348-386      9.92  524.31  5.3e-06       40.0%     59.53
  WD10:  Seg 37   389-427      8.52  466.50  3.2e-05       35.0%     57.06
  WD11:  Seg 41   431-469      9.54  508.92  8.6e-06       37.5%     58.86

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     -----MFETGLTDVWTLDFSPDGKHVISGSNAGKILIFG
   WD 2   38-76     GKQEQVLDTRGKFTLSVAYSPDGKYIASGALDGIINIFD
   WD 3   80-118    GKLVHTLEGHAMSIRSLCFSPDSQLLLTGSDDGHMKLYD
   WD 4  122-160    ANLAGTLSGHASWVLSVAFSPDGKRFVSGSADRTVRVWD
   WD 5  164-202    MQCQHTFKEHNDQVWGVKFNAESNKIISVSEDKGPSKDY
   WD 6  222-260    LELLHTLEGHEMPVVSVAVSPDGETIASTSLDSSLIIWD
   WD 7  264-302    GQKIREIQTDSSDMWKIVFSPDGSQVATGGHTGKVTVYG
   WD 8  306-344    GTVDKVLDTRGKFIMSVAWSPDGRYIASGAEGGSVYLFD
   WD 9  348-386    GKMLHTIEAHAQAVRSLAFSPKTKLLASASNDGYVNVYN
   WD10  389-427    SAALQNKLDHKCWAVSVCFSPDGQRMATSAADGSIRVVL
   WD11  431-469    FRVLHTFEEHTHIVCGVQFNADGSKLVSVSKDKSINIYE

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD