WDRR: WD40 Repeat Recognition
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| JobID: 9TMWB1659505813 Submitted: 2022-08-03 13:50:13 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79744273 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh20G008210 (Len=480) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh20G008210, Len=480): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAEQRTEDDSSTKEGGEVEKEKQKKNMDRELLSCLLQPTSIGVDPDYIGMRRLLLHRKAEAAVLRRKDWKCNGKGYVAFR 80
WD40-rpts (_________________WD 1________________)_____________
Query 81 NYIRRPRNWESSRIPSLQSTPGNSGRWILPPSSISALHEVESWSSIKDLQSQRRSSFSSNASDNSQLHTRRTEFAYSFVG 160
WD40-rpts _____WD 2__________________)(___________________WD 3__________________) (_
Query 161 MHCIFDQCKVAVTVLKFGHMSSDLLAYGAADGSLTVCNVSEPSSTVKHLLGHSKDLTDFDFSSNNQYIASSSMDKTVRVW 240
WD40-rpts ________________WD 4_________________) (_________________WD 5________________
Query 241 EISRGICIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIVTKLVLDSEVTSMDHDHTGQILFCGDGNGYV 320
WD40-rpts ) (_________________WD 6________________) (________________WD 7_____________
Query 321 YSVSMNSHTGALSRAHRQWCSSRRKSPVCTVQYRSFSLLARGPVLLTCTQDGNLSFFSIALEVQGYLTLRCSLKLAPRIH 400
WD40-rpts ___) (________________WD 8________________) (____
Query 401 SIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPKHTCVNKLQGHQFPVIGVAWNHGENLLASSDLYGTVIVWKRSKIS 480
WD40-rpts ___________WD 9_______________) (_________________WD10________________)
 10 WD40-repeats found in QUERY=CmaCh20G008210 (Len=480): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 29-67 5.54 343.30 0.00147 10.0% 9.30 WD 2: Seg 4 66-108 5.33 334.94 0.00191 7.5% 18.40 WD 3: Seg 7 109-151 5.27 332.20 0.00207 5.0% 30.30 WD 4: Seg 11 159-198 7.01 404.08 0.00022 20.0% 54.04 WD 5: Seg 15 203-241 9.86 522.01 5.7e-06 30.0% 56.45 WD 6: Seg 19 245-283 8.68 473.41 2.6e-05 22.5% 58.22 WD 7: Seg 23 287-324 7.22 413.01 0.00017 25.0% 56.11 WD 8: Seg 28 341-378 7.79 436.46 8.2e-05 20.0% 40.48 WD 9: Seg 32 396-431 7.19 411.62 0.00018 17.5% 44.90 WD10: Seg 35 437-475 9.00 486.38 1.7e-05 30.0% 53.57Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 29-67 --------RELLSCLLQPTSIGVDPDYIG-MRRLLLHRKAEAAVLRRK WD 2 66-108 RKD---WK-CNGKGYVAFRNYIRRPRNWE-SSRIPSLQSTPGNSGRWI WD 3 109-151 LPPSSISA----LHEVESWSSIKDLQSQR-RSSFSSNASDNSQLHTRR WD 4 159-198 -VG---MH----CIFDQCKVAVTVLKFGHMSSDLLAYGAADGSLTVCN WD 5 203-241 -SS---TV----KHLLGHSKDLTDFDFSS-NNQYIASSSMDKTVRVWE WD 6 245-283 -GI---CI----RVIYGVSSQLCIRFHPV-NNNFLSVGNANKEITVFN WD 7 287-324 -GR---IV----TKLVLD-SEVTSMDHDH-TGQILFCGDGNGYVYSVS WD 8 341-378 --S---SR----RKSPVCTVQYRSFSLLA-RGPVLLTCTQDGNLSFFS WD 9 396-431 AP-----------RIHSIRASFCPLLSLE-KGEYIVAGSEDSNVYFYD WD10 437-475 -HT---CV----NKLQGHQFPVIGVAWNH-GENLLASSDLYGTVIVWK WD40 Template TGE---CL----RTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD |
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