Input parameters:

  Query = CsaV3_6G015450 (Len=530)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G015450, Len=530):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSEKKRKMEQEESVRNMKILTDFLHCLRKQKVSELNEVQIDLQFIKEDISAVERHRMELSRARDRYSMKLRKAGDDMKA 80  
WD40-rpts                                                                                      

Query       81 REPWLTLMDKRNDGPTSTSLNTWGVVSAGNFQNKKADSRSQVSTYGLYKKDSLSGAEPQVNHTGLSVARKKRVHAQFNDL 160 
WD40-rpts                                                                                      

Query      161 QECYLQKRRQLPNQLLDQQEKDKNVMHREGYNPGLSDFQSVLTTFTRYSRLRVIAELRHGDLFHNTNIVSSIEFDRDDEL 240 
WD40-rpts                       (________________WD 1________________) (________________WD 2___

Query      241 FATAGVSRCIKVFDFSSVVNEPPDAHCPIVEMSTRAKLSCLSWDKQSKNIIASSDYEGIVTVWDVNRGQSVMEYEEHEKR 320 
WD40-rpts      _____________)          (_________________WD 3_________________)   (____________

Query      321 AWSVDFSRTEPSRLVSGSDDCKVKVWCMKQEASVLDIDMKANICCVKFNPGSGNHIAVGSADHNIHYYDLRNISHPLHVF 400 
WD40-rpts      _____WD 4_________________)   (_________________WD 5________________)    (______

Query      401 TGHKKAVSYVKFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKEISRPL 480 
WD40-rpts      __________WD 6________________)   (_________________WD 7________________)       

Query      481 TWHRFGSPDVTDVEDDVGSYFISAVCWKSDSPTILTANSQGTIKVLVLAV 530 
WD40-rpts              (_________________WD 8________________)   

8 WD40-repeats found in QUERY=CsaV3_6G015450 (Len=530):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   178-215      3.29  250.65  0.02578       10.0%     21.79
  WD 2:  Seg  4   217-254      8.16  451.86  5.1e-05       25.0%     52.77
  WD 3:  Seg  8   265-304      7.23  413.22  0.00017       20.0%     49.66
  WD 4:  Seg 12   308-347      8.84  479.98  2.1e-05       40.0%     55.72
  WD 5:  Seg 16   351-389      6.35  377.16  0.00051       22.5%     56.53
  WD 6:  Seg 20   394-431      8.46  464.17  3.4e-05       32.5%     48.72
  WD 7:  Seg 24   435-473      9.13  491.84  1.5e-05       25.0%     57.42
  WD 8:  Seg 28   489-527      6.45  381.10  0.00045       17.5%     48.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  178-215    QQE--KDKNVMHREGYNPGLS-D-FQSV-LTTFTRYSRLRVIA
   WD 2  217-254    LRH--GDLFHNTNIVSSIEFD-R-DDEL-FATAGVSRCIKVFD
   WD 3  265-304    -AHCPIVEMSTRAKLSCLSWD-K-QSKNIIASSDYEGIVTVWD
   WD 4  308-347    -GQSVMEYEEHEKRAWSVDFSRT-EPSR-LVSGSDDCKVKVWC
   WD 5  351-389    -EASVLDIDMKAN-ICCVKFN-PGSGNH-IAVGSADHNIHYYD
   WD 6  394-431    -SHPLHVFTGHKKAVSYVKFL-S-NSE--LASASTDSTLRLWD
   WD 7  435-473    -NLPVRTFRGHTNEKNFVGLT-V-NNEY-IACGSETNEVFVYH
   WD 8  489-527    -DVTDVEDDVGSYFISAVCWK-S-DSPT-ILTANSQGTIKVLV

   WD40 Template    TGECLRTLSGHTSGVTSVSFS-P-DGKR-LVSGSEDGTIKVWD