WDRR: WD40 Repeat Recognition
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| JobID: 9Q7GX1659514193 Submitted: 2022-08-03 16:09:53 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79737037 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_2G017170 (Len=524) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_2G017170, Len=524): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLVGEVSMLRNYGFHIPFSISNFIFFTQNLKFLSLSLSLSLSLSLLLFYENPTMLGGGGSFRGGQDFFGRNNSNSISRSN 80
WD40-rpts (__________________WD 1_________________) (______
Query 81 KLIKSPFDNSNIPPFPSSTATATADQPIFRPSMDTDPDPEHSFFEPASTSPFTKSPWSSHFNSDALPSPADNTSFLPNIL 160
WD40-rpts ___________WD 2________________) (_______________WD 3_______________)__
Query 161 MGSLVREEGHIYSLAASRDLLYTGSDSKNIRVWKNHKEFSGFKSNSGLVKSIVIGGGKIFTGHQDGKVRVWKISSRDPSV 240
WD40-rpts ______________WD 4_______________)(________________WD 5________________)
Query 241 HKRVGTLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWRVSDSKCLESIEAHED 320
WD40-rpts (______________WD 6_____________) (___________
Query 321 AVNTLVSSIDGMVYTGSADGSVKVWRRELQGKGTKHFFSQTLVKQECAVTALAVNDDATFVYCGSSDGVVNFWEREKSLS 400
WD40-rpts _____WD 7________________) (_________________WD 8________________)(_____
Query 401 HGGVLRGHKLAILCLATAGHLLLSGSADMGICVWQRIASDHFCLSVLTGHTGPVKCLAVEKDNEVSEGERRWIVYSGSLD 480
WD40-rpts _____________WD 9_________________) (_____________________WD10______________
Query 481 KSVKMWRVSEQPPSTFQRSPSFIPECSPTAGLLVNAPSFVIREQ 524
WD40-rpts ______)
 10 WD40-repeats found in QUERY=CsaV3_2G017170 (Len=524): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 30-70 6.04 364.15 0.00077 12.5% 50.04 WD 2: Seg 6 74-112 7.56 426.84 0.00011 12.5% 38.93 WD 3: Seg 9 123-158 4.83 314.14 0.00363 17.5% 22.47 WD 4: Seg 10 158-194 6.47 381.84 0.00044 25.0% 48.03 WD 5: Seg 14 195-232 8.45 463.83 3.5e-05 20.0% 52.55 WD 6: Seg 20 273-305 7.86 439.16 7.5e-05 32.5% 47.69 WD 7: Seg 23 309-346 8.63 471.01 2.8e-05 35.0% 52.90 WD 8: Seg 27 356-394 8.55 467.92 3.1e-05 25.0% 54.92 WD 9: Seg 31 395-435 6.79 395.01 0.00030 32.5% 48.54 WD10: Seg 35 441-487 7.59 428.23 0.00011 35.0% 53.95Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 30-70 -LKFL---SLSLSLSLSLSLLLFYENPT--------MLGGGGSFRGGQDFFGR WD 2 74-112 -NSIS---RSNKLIKSPFDNSNIPPFPS--------STATATA--DQPIFRPS WD 3 123-158 -FFEP---ASTSPFTKSPWSSHFNSDA-----------LPSPA--DNTSFLPN WD 4 158-194 -NILM---GSLVREEGHIYSLAASRD----------LLYTGSD--SKNIRVWK WD 5 195-232 NHKEF---SGFKSNSGLVKSIVIG--GG--------KIFTGHQ--DGKVRVWK WD 6 273-305 ----------WIKHFDAISSLSLSEDQA--------FLYSASW--DKTFKVWR WD 7 309-346 -SKCL---ESIEAHEDAVNTLVSSIDG---------MVYTGSA--DGSVKVWR WD 8 356-394 -HFFS---QTLVKQECAVTALAVNDDAT--------FVYCGSS--DGVVNFWE WD 9 395-435 REKSLSHGGVLRGHKLAI--LCLATAGH--------LLLSGSA--DMGICVWQ WD10 441-487 -HFCL---SVLTGHTGPVKCLAVEKDNEVSEGERRWIVYSGSL--DKSVKMWR WD40 Template TGECL---RTLSGHTSGVTSVSFSPDGK--------RLVSGSE--DGTIKVWD |
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