Input parameters:

  Query = CsaV3_1G000070 (Len=520)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G000070, Len=520):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQPVKKPEVEELCFAHSPEITTEDLTPDECNSTVEDQEATLIALVEHRTREVHHLQQRISYYTRQLEEAEKRLQESESL 80  
WD40-rpts                                                                                      

Query       81 LARSQGPRYTLPSRSSQDCGFECVEAEPTSTSPIHGNGDLEAKPLLGSSHNPSIPNRSNLATTGEQEKPCMVTIGRVDDQ 160 
WD40-rpts                                                                                      

Query      161 SDMKRRKFEQKDHKELISLVRSSSSSLTAQLDASYYFTSQHKRKLRSLAPGPVNDQLFVTSALDGMINLWQIQSKGSFAS 240 
WD40-rpts                                 (___________________WD 1___________________)         

Query      241 LLCATNCLSQKQRRWPEGIAWHPGGNNLFSVYNADGGDSQISVLNFNRTKEKASVTFLEDKPHVKGIINDISFLPWDSVP 320 
WD40-rpts       (___________________WD 2___________________)        (__________________WD 3____

Query      321 FITGGSDHAVVLWNMRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLESKCMSV 400 
WD40-rpts      _____________)(_____________________WD 4____________________)   (_______________

Query      401 LPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSWSPNGLHLTSGSSDPVIHVFDIRYNSH 480 
WD40-rpts      ___WD 5_________________)           (________________WD 6________________)     (

Query      481 MPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNIGLHKMV 520 
WD40-rpts      _________________WD 7________________)  

7 WD40-repeats found in QUERY=CsaV3_1G000070 (Len=520):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   188-231      8.04  446.78  5.9e-05       25.0%     48.93
  WD 2:  Seg  6   242-285      7.67  431.55  9.5e-05       17.5%     35.38
  WD 3:  Seg  9   294-334      8.50  465.87  3.3e-05       20.0%     43.71
  WD 4:  Seg 12   335-381      8.14  450.87  5.2e-05       22.5%     52.56
  WD 5:  Seg 16   385-425      6.38  378.23  0.00050       15.0%     36.54
  WD 6:  Seg 21   437-474      9.24  496.17  1.3e-05       35.0%     46.43
  WD 7:  Seg 24   480-518      8.00  445.06  6.2e-05       22.5%     52.74

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  188-231    TAQ-------LDASYYFTSQHKR--KLRSLAPGPVNDQLFVT----SALDGMINLWQ
   WD 2  242-285    LCA-------T---NCLSQKQRR--WPEGIAWHP-GGNNLFSVYNADGGDSQISVLN
   WD 3  294-334    SVT-------F---LEDKPHVKG--IINDISFLPWDSVPFIT----GGSDHAVVLWN
   WD 4  335-381    MRDKYNTWKPE---LLHRNLHSS--AVMGVSGMQ-MKQIVLS----AGSDKRLLGFD
   WD 5  385-425    -GS-------T---LFKHQLESKCMSVLPNPCDF-NLFMVQT----GSPENQLRLFD
   WD 6  437-474    --G-------W---KQENSESQS--ALIKQSWSP-NGLHLTS----GSSDPVIHVFD
   WD 7  480-518    -HM-------P---SQSLKAHQK--RVFKAVWLR-SLPFLVS----ISSDLNIGLHK

   WD40 Template    TGE-------C---LRTLSGHTS--GVTSVSFSP-DGKRLVS----GSEDGTIKVWD