WDRR: WD40 Repeat Recognition
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| JobID: 9KCHN1659505076 Submitted: 2022-08-03 13:37:56 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79745918 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh18G005880 (Len=784) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh18G005880, Len=784): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRACQSHGNLRSPHSYSESCPEDDEPLCNLPEAADCEGIVDCLKKAVTSSPPPHNFLRLSTPRLPKYLHCFSYYSGTPGL 80
WD40-rpts
Query 81 SVMGGGSIGALVPTVKPDPSALDSTASPAPQPLPLPPPPPSSSPPPPPLPVVMAAQFDAGEAKASASDVNAEDLDKDMLC 160
WD40-rpts
Query 161 PICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCSNFIRSNSIFPNILLDKFLKKTAARQIKKTTSPFEYLHHALQK 240
WD40-rpts
Query 241 GCDMSIKDLDELLTLLAEKKRKMEQEEAETNMQILLGFLYYLRKQKLEELNEIQADLHYIKEDISSVEKQRLELYRSKER 320
WD40-rpts
Query 321 YSGKMKMLVDDTVSTKSRSSLIDKNGNGANCCPQRSQGWMSSGNSPNARADAKTHVGSQGLLRKDAHCSSDLHSVAQSGL 400
WD40-rpts
Query 401 GVANKRRVHTQFNELQDYYLQKRRNWRKHLVKQEDKDIKLSSGESYNPALEDFQSVLTSFMRYSRLRVIAELRHGDLFHS 480
WD40-rpts (_______________WD 1______________) (_______
Query 481 ANIVSSIEFDRDDEFFATAGVSRCIKVFEFSSVVNEPADVHFPVVEMSTRSKLSCLSWNKYTKSHIASSDYEGIVTVWDV 560
WD40-rpts _________WD 2_______________)(______________________WD 3______________________)
Query 561 NTRQSVMEYEEHEKRAWSVDFSRSEPTMLVSGSDDCKVKIWCTRQEASVFNIDLKANVCSVKYNPGSSLYVAVGSADHNI 640
WD40-rpts (_________________WD 4_________________) (_________________WD 5_____________
Query 641 HYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSTLRLWDVKEYMPLCVYRGHTNEKNFVGLTVNSEYIACGSE 720
WD40-rpts ___) (________________WD 6________________) (_________________WD 7_________
Query 721 TNEVFIYHKAISKPMAWHRFSSDLEDNDEDAGSYFISAVCWKSDSPTILTANSQGTIKVLVLAP 784
WD40-rpts _______)(________________________WD 8_______________________)
 8 WD40-repeats found in QUERY=CmaCh18G005880 (Len=784): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 418-452 5.08 324.41 0.00264 12.5% 29.20 WD 2: Seg 5 473-509 7.03 405.05 0.00022 20.0% 47.82 WD 3: Seg 8 510-559 6.21 371.05 0.00062 20.0% 50.53 WD 4: Seg 12 563-602 8.14 450.99 5.2e-05 32.5% 56.31 WD 5: Seg 16 606-644 6.08 365.84 0.00073 22.5% 56.58 WD 6: Seg 19 649-686 7.77 435.57 8.4e-05 32.5% 47.07 WD 7: Seg 23 690-728 8.35 459.47 4.0e-05 20.0% 56.92 WD 8: Seg 27 729-781 6.44 380.50 0.00046 17.5% 44.87Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 418-452 ------------------Y---------YLQKRRNWRKHLVKQE-DKD-IKLSSGESYNPALED WD 2 473-509 RH----------------G---------DLFHSANIVSSIEFDR-DDE-FFATAGVSRCIKVFE WD 3 510-559 FSSVV-------------NEPADVHFPVVEMSTRSKLSCLSWNK-YTKSHIASSDYEGIVTVWD WD 4 563-602 -RQSV-------------M---------EYEEHEKRAWSVDFSRSEPT-MLVSGSDDCKVKIWC WD 5 606-644 -EASV-------------F---------NIDLKAN-VCSVKYNP-GSSLYVAVGSADHNIHYYD WD 6 649-686 -SQPL-------------H---------VFNGHKKAVSYVKFLS-NNE--LASASTDSTLRLWD WD 7 690-728 -YMPL-------------C---------VYRGHTNEKNFVGLTV-NSE-YIACGSETNEVFIYH WD 8 729-781 KAISKPMAWHRFSSDLEDN---------DEDAGSYFISAVCWKS-DSP-TILTANSQGTIKVLV WD40 Template TGECL-------------R---------TLSGHTSGVTSVSFSP-DGK-RLVSGSEDGTIKVWD |
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