WDRR: WD40 Repeat Recognition
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| JobID: 9JYWX1659503453 Submitted: 2022-08-03 13:10:53 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79748804 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh15G011850 (Len=527) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh15G011850, Len=527): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLPYSLSLSHHCLSLSSLNFIQISSIDSPMEDQARTPQSSARASPSSSSSSSSNLQLNLPPSMSRAAHSLETLTPSRQIG 80
WD40-rpts
Query 81 RMININHHLSPSRAIYSDRFIPSRSGSNFALFDISPVSNSASDGREDTSTAYATLLRTALFGPDSGVVPPATPEKRSSPM 160
WD40-rpts
Query 161 CLPNHNIFRYKTETRRSMHSLSPFGFDDAARGLSPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGN 240
WD40-rpts (__________________WD 1_________________)__________________WD 2_____________
Query 241 CVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGS 320
WD40-rpts _____)(___________________WD 3__________________) (________________WD 4_______
Query 321 RDKSILQRDIRAQDDFTSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHG 400
WD40-rpts ________) (_________________WD 5________________) (__________________WD 6__
Query 401 LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYL 480
WD40-rpts ________________) (_________________WD 7_________________) (________________
Query 481 AISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASFLGRTTIR 527
WD40-rpts _WD 8________________)
 8 WD40-repeats found in QUERY=CmaCh15G011850 (Len=527): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 165-205 3.14 244.52 0.03110 20.0% 31.60 WD 2: Seg 6 205-246 4.13 285.28 0.00887 5.0% 47.71 WD 3: Seg 10 247-289 7.75 434.72 8.6e-05 27.5% 53.81 WD 4: Seg 14 293-329 7.06 406.11 0.00021 32.5% 53.74 WD 5: Seg 18 334-372 9.26 497.29 1.2e-05 35.0% 56.21 WD 6: Seg 22 376-417 7.53 425.53 0.00011 25.0% 46.86 WD 7: Seg 26 421-460 5.48 341.08 0.00158 27.5% 51.80 WD 8: Seg 30 464-502 10.01 528.35 4.7e-06 40.0% 56.95Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 165-205 -HNIFRYKT---ETRRSMHSLSPFGFDDAARGLS---PSPVKTPRKVP WD 2 205-246 PRSPYKVLD-APALQDDFYLNL--VDWSSHNVLA---VGLGNCVYLWN WD 3 247-289 ACSSKVTKLCDLGIDDSVCSVG--WAQRGTHLAV---GTSNGKVQIWD WD 4 293-329 -CKRVRTME---GHRLRVGALA--WSSSL--LSS---GSRDKSILQRD WD 5 334-372 -DDFTSKLS---GHKSEVCGLK--WSYDNRELAS---GGNDNRLFVWN WD 6 376-417 -TQPVLKFY---EHTAAVKAIA--WSPHLHGLLASGGGTADRCIRFWN WD 7 421-460 -NTHLSCMD---TG-SQVCNLA--WSKNVNELVS-THGFSQNQIIVWR WD 8 464-502 -MSKLATLT---GHTFRVLYLA--ISPDGQTIVT---GAGDETLRFWN WD40 Template TGECLRTLS---GHTSGVTSVS--FSPDGKRLVS---GSEDGTIKVWD |
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