Input parameters:

  Query = CmaCh03G008660 (Len=316)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh03G008660, Len=316):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSEPSQSDSYKPYTLSQTLTGHKRAISSVKFSADGRLLGSSSADKTLRTYSCSNSTLTPLHEFQGHEQGVSDLAFSSDS 80  
WD40-rpts                  (_________________WD 1_________________)(___________________WD 2____

Query       81 RFLVSASDDKTLRLWDVSTGSLIKTLNGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDF 160 
WD40-rpts      _______________)   (_________________WD 3________________)   (_________________W

Query      161 NRDGSLIVSSSYDGLCRIWDASTGHCVKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNFSTGKFLKTYTGHANSK 240 
WD40-rpts      D 4________________)   (_________________WD 5_________________)   (_____________

Query      241 FCIASTFSVTNGKYIVSGSEDNCVYLWELQTREIVQKLEGHSDTVISVSCHPSENLIASGALGNDKTVKIWTQKKD 316 
WD40-rpts      _____WD 6__________________)   (__________________WD 7_________________)    

7 WD40-repeats found in QUERY=CmaCh03G008660 (Len=316):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       9.60  511.31  8.0e-06       37.5%     59.25
  WD 2:  Seg  5    53-96      10.02  528.48  4.7e-06       40.0%     57.74
  WD 3:  Seg  9   100-138     10.94  566.65  1.4e-06       45.0%     55.33
  WD 4:  Seg 13   142-180     10.93  566.03  1.5e-06       45.0%     58.46
  WD 5:  Seg 17   184-223      9.16  493.23  1.4e-05       37.5%     53.24
  WD 6:  Seg 21   227-268      8.74  475.61  2.4e-05       35.0%     56.74
  WD 7:  Seg 25   272-312      8.84  479.81  2.1e-05       37.5%     55.46

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     PY----TLSQTL-TGHKRAISSVK---FSADGRLLGSSS--ADKTLRTYS
   WD 2   53-96     CSNSTLTPLHEF-QGHEQGVSDLA---FSSDSRFLVSAS--DDKTLRLWD
   WD 3  100-138    -G----SLIKTL-NGHTNYVFCVN---FNPQSNMIVSGS--FDETVRIWD
   WD 4  142-180    -G----KCLKVL-PAHSDPVTGVD---FNRDGSLIVSSS--YDGLCRIWD
   WD 5  184-223    -G----HCVKTLIDDENPPVSFVK---FSPNGKFILVGT--LDNTLRLWN
   WD 6  227-268    -G----KFLKTY-TGHANSKFCIASTFSVTNGKYIVSGS--EDNCVYLWE
   WD 7  272-312    -R----EIVQKL-EGHSDTVISVS---CHPSENLIASGALGNDKTVKIWT

   WD40 Template    TG----ECLRTL-SGHTSGVTSVS---FSPDGKRLVSGS--EDGTIKVWD