WDRR: WD40 Repeat Recognition
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| JobID: 9F0O41659519229 Submitted: 2022-08-03 17:33:49 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79732505 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_6G023930 (Len=476) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_6G023930, Len=476): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 METVEPQSLKKLSFKSLKRALDLFSPVHGHVAPLDSESKKIRISHKISVEYGGLKNTGTKPTGQASSAPDSAIGTSAPSN 80
WD40-rpts (____________________WD 1___________________) (________________________WD
Query 81 ALALPGPGDSRDVKSGAQNAVVIGPTVQPNTQNDGGLQGRSSAIVSAPGSSERMSTSAIMERIPSKWPRPVWHAPWRNYR 160
WD40-rpts 2________________________) (________________WD 3________________) (____
Query 161 VISGHLGWVRSVAFDPSNTWFCTGSADRTIKIWDVASGKLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQN 240
WD40-rpts _____________WD 4________________) (_________________WD 5________________) (
Query 241 KVIRHYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWD 320
WD40-rpts _________________WD 6________________) (_________________WD 7________________)
Query 321 LRYGKTMTTLTYHKKSVRAMALHPKEHSFASASADNIKKFNLPRGEFVHNMLSQQKTIINAMAVNEEGVMATGGDNGSLW 400
WD40-rpts (________________WD 8________________) (_________________WD 9______________
Query 401 FWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLITCEADKTIKMWKEDENATPETHPLNFKPPKDIRRF 476
WD40-rpts __) (_________________WD10_________________)
 10 WD40-repeats found in QUERY=CsaV3_6G023930 (Len=476): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-45 4.68 308.05 0.00439 20.0% 11.33 WD 2: Seg 4 53-106 5.21 329.95 0.00222 12.5% 21.24 WD 3: Seg 7 111-148 5.77 353.03 0.00109 17.5% 21.96 WD 4: Seg 10 156-194 9.88 522.69 5.6e-06 42.5% 55.97 WD 5: Seg 14 198-236 9.55 509.36 8.5e-06 30.0% 57.73 WD 6: Seg 18 240-278 9.71 515.68 7.0e-06 32.5% 57.91 WD 7: Seg 22 282-320 10.02 528.58 4.7e-06 42.5% 56.85 WD 8: Seg 26 324-361 7.61 429.12 0.00010 27.5% 56.54 WD 9: Seg 30 365-403 8.66 472.25 2.7e-05 15.0% 56.41 WD10: Seg 35 414-453 9.35 501.04 1.1e-05 25.0% 42.28Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-45 -METVEP--------------QSLKKLSFKSLKRALDLFSPVHGHVAPLDSESKKIRISH WD 2 53-106 GLKNTGTKPTGQASSAPDSAIGTSAPSNALALPGPGD------SRDVKSGAQNAVVIGPT WD 3 111-148 -TQNDGG--------------LQGRSSAIVSAPGSSE------R-MSTSAIMERIPSKWP WD 4 156-194 -WRNYRV--------------ISGHLGWVRSVAFDPS------NTWFCTGSADRTIKIWD WD 5 198-236 -GKLKLT--------------LTGHIEQVRGLAVSNR------HTYMFSAGDDKQVKCWD WD 6 240-278 -NKVIRH--------------YHGHLSGVYCLALHPT------IDVLLTGGRDSVCRVWD WD 7 282-320 -KMQIHA--------------LSGHDNTVCSVFTRPT------DPQVVTGSHDTTIKFWD WD 8 324-361 -GKTMTT--------------LTYHKKSVRAMALHPK------EHSFASASAD-NIKKFN WD 9 365-403 -GEFVHN--------------MLSQQKTIINAMAVNE------EGVMATGGDNGSLWFWD WD10 414-453 QTIVQPG--------------SLDSEAGIYALSYDIT------GSRLITCEADKTIKMWK WD40 Template TGECLRT--------------LSGHTSGVTSVSFSPD------GKRLVSGSEDGTIKVWD |
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