WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: 9D4V41659514389 Submitted: 2022-08-03 16:13:09 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79736749 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G015110 (Len=1728) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G015110, Len=1728): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTNMALRKFVCGSTPSINLKHSSFPIKLHEQTQFEEPETNRTLEPDVEIDPREVYFLIMHFLSSGPCLRTCGLLWDELFE 80
WD40-rpts
Query 81 HQLLPRRYHAWYSRNGVHSGHENDDGLSFPLSYQHLVERYPHVDKNHLIKLLKQLILNKAPPSRGMSGGIAPNAADVPTL 160
WD40-rpts (______________________WD 1___________
Query 161 LGTGTFSLLSYDKHEGVSKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKR 240
WD40-rpts ___________)(______________________WD 2______________________) (_____
Query 241 LRGHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGL 320
WD40-rpts ____________WD 3________________) (_________________WD 4________________) (_
Query 321 PISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQSAPRIYVPKPLDSVTARNGGSSVSTLPQSHQIFCCA 400
WD40-rpts ________________WD 5_________________) (_________________
Query 401 FNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDVAKEDNVHKFKNSWF 480
WD40-rpts WD 6________________) (______________________________WD 7____________
Query 481 TYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAI 560
WD40-rpts _________________) (_________________WD 8________
Query 561 MDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTS 640
WD40-rpts ________) (_________________WD 9_________________) (_________________WD10___
Query 641 IILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVIDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQ 720
WD40-rpts _____________)(_________________WD11_________________)
Query 721 QRRLGAMSVEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLVEPLPDIVDAMDWGPENEVQSEDTDSEYNVTEDYSTGGE 800
WD40-rpts
Query 801 QRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKKQKADMEVMTSSGRRVKRRNMDEYEGDAIRSSRNRKSKSGHKPSK 880
WD40-rpts
Query 881 KKSASKSLRPQRAAARNARNWISSFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLQNRIKHSKGKEVFLYGA 960
WD40-rpts
Query 961 EEITKSLDVPESRVDAGNRKKLIVKFSVKNLNKGDPPLSTALSCSNTADVASSSSRSPKEVIETSQNLVRSERQFVNIDG 1040
WD40-rpts
Query 1041 NSDLTEVYTNGNIRWGGSRVRSSKRIRFGDTMPSDAYAVSSSLPNGDHNENENAVHEYLERENHFGAPSPHAKVVNFCSD 1120
WD40-rpts
Query 1121 EMDTVSPTKLKEEDDNASGHSQEMVNGGELKCVGNSKSCDHDDSNNLIMFSSDATTTSIQNGTHAPEQTENTAPMRKKIR 1200
WD40-rpts
Query 1201 FKSISLDPEHSLKHKIESLDESSKNDEYNTVSGSPQHPNGLKDSVTNETYSDLRNNCPEDMDIAVDEKPVSTLCNSSELQ 1280
WD40-rpts
Query 1281 AVETNKMYTAVYTRSKSNKGKSNIDSNGCASGEHALGNSSLPADADSHKIMLRKARSIRFKESSYDLNNVGDDLKSDEDQ 1360
WD40-rpts
Query 1361 ELEQKSRRSGNSSADRSHIPSEEWGSSSRMTVGSRSTRNRRGTLIQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQ 1440
WD40-rpts
Query 1441 LGDEVAYLRQGHQEYIQHCCANYCHIKDMGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPSSQVYLQS 1520
WD40-rpts
Query 1521 FKLTLPELTSFPDFLVEKSRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIISVQAKSSEFPESPWERYTIRYRSDP 1600
WD40-rpts
Query 1601 AEPHLHSPWELYDTIIQWEQPRIDDETKSKLLMAIDKLMSPSMQGRFGIQDLMILSRKTQYKNRFPVPLCLEIIQERLQN 1680
WD40-rpts
Query 1681 DYYRSLEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL 1728
WD40-rpts
 11 WD40-repeats found in QUERY=CsaV3_3G015110 (Len=1728): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 123-172 2.90 234.51 0.04220 5.0% 24.81 WD 2: Seg 6 173-222 3.22 247.52 0.02837 15.0% 26.69 WD 3: Seg 9 235-273 8.22 454.34 4.7e-05 27.5% 53.89 WD 4: Seg 13 277-315 8.99 486.00 1.8e-05 30.0% 54.93 WD 5: Seg 17 319-358 8.86 480.57 2.1e-05 45.0% 54.67 WD 6: Seg 21 383-421 7.19 411.85 0.00018 22.5% 53.75 WD 7: Seg 25 434-498 4.61 305.19 0.00479 30.0% 46.89 WD 8: Seg 29 531-569 6.08 365.84 0.00073 22.5% 54.39 WD 9: Seg 33 573-612 7.39 419.77 0.00014 32.5% 55.58 WD10: Seg 37 616-654 4.98 320.17 0.00301 17.5% 47.66 WD11: Seg 41 655-694 5.80 354.29 0.00105 10.0% 30.93Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 123-172 VDKNHLIKLL----------KQLILNKAPPSRGMSGGIAPNAAD--------------------------V-PT-LLGTGTFSLLSYD WD 2 173-222 KHEGVSKPSGPPAHMRWPHMK----------ADSVRGLSLREIG--------------------------G-GF-SRHQRAPSVRAAC WD 3 235-273 -MQNIKRLRG----------H----------RNAVYCAIFDRAG--------------------------R-YV-ITGSDDRLVKIWS WD 4 277-315 -AYCLASCRG----------H----------EGDITDLAVSSNN--------------------------A-VV-ASSSNDFVIRVWR WD 5 319-358 -GLPISVLRG----------H----------TGAVTAIAFSPRA--------------------------AYQL-LSSSDDGTCRIWD WD 6 383-421 -GGSSVSTLP----------Q----------SHQIFCCAFNACG--------------------------T-IF-VTGSSDTLARVWS WD 7 434-498 -NHEIDVLAG----------H----------ENDVNYVQFSGCAVASRFTTTDVAKEDNVHKFKNSWFTYD-NI-VTCSRDGSAIIWV WD 8 531-569 -GGPRQRILP----------T----------PRGVNMIIWSLDN--------------------------R-FV-LAAIMDCRICVWN WD 9 573-612 -GSLVHSLTG----------H----------TESTYVLDVHPFN--------------------------P-RIAMSAGYDGKTIVWD WD10 616-654 -GTPIRIYEI----------S----------HFKLVDGKFSSDG--------------------------T-SI-ILSDDVGQLYILS WD11 655-694 TGQGESQQDA----------K----------YDQFFLGDYRPLI--------------------------Q-DP-SGNVIDQETQLST WD40 Template TGECLRTLSG----------H----------TSGVTSVSFSPDG--------------------------K-RL-VSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |