Input parameters:

  Query = CmaCh09G007250 (Len=594)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh09G007250, Len=594):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGGLEDEEPASKRMKILPDRLKGLSNGSSVVEPSGGSSRDSMARPLQSEGDNGDVIGSKGVIKRVEFVRLIANALYSLGY 80  
WD40-rpts                                                                                      

Query       81 TKTGAYLEEESGIPLHSPVVNVLMQQIHDGKWDESVETLQKIGLSDESVVKAASVLVLEQKFFELLEGDKVTEALQTLRS 160 
WD40-rpts                                                                                      

Query      161 EITPYHVNERRIRELSSCLVSPSMRAQIDSSCQQSAKAKARSQLLEELQKLLPASLMIPEKRLEHLVERALLLQRDACAF 240 
WD40-rpts                                                                                      

Query      241 HNALNKEMSLYRDHDCGKNQIPSRTLQVLQDHSDEVWFLQFSHNGKYLASSSSDRSAIIWEVDLNGRISLKHRLLDHEQP 320 
WD40-rpts                            (_________________WD 1________________)(__________________

Query      321 ISLVSWSPDDSQLLTCGVEEAVRRWDVATGACLHVYEKAGLGLVSCGWFPDGKHILAGVTDKSICMWDLDGNELEGWKGQ 400 
WD40-rpts      __WD 2___________________)   (_________________WD 3________________)   (________

Query      401 RTLKISDLEITNDGKKIISICRDTAILLLDRELNVDKLIEEDQIITSFQLSRDNKFLLVNLLNQEIHLWNLEGEAEIVTA 480 
WD40-rpts      _________WD 4________________) (_________________WD 5________________)    (_____

Query      481 YTGHKRTRFVIRSCFGGLDQAFIASGSEDSLVYIWQRGTGEVVGALEGHSGSVNCVSWNPANPHMLASASDDHTIRIWGL 560 
WD40-rpts      _____________WD 6__________________)   (_________________WD 7_________________) 

Query      561 RGLDLDVVNSKSNEQHSSSNGNGNGVHCSNRGTS 594 
WD40-rpts       (______________WD 8_____________)

8 WD40-repeats found in QUERY=CmaCh09G007250 (Len=594):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   263-301      8.63  471.17  2.8e-05       32.5%     53.42
  WD 2:  Seg  7   302-346      8.53  466.93  3.2e-05       25.0%     54.56
  WD 3:  Seg 11   350-388      9.35  500.72  1.1e-05       35.0%     56.39
  WD 4:  Seg 15   392-430      8.03  446.18  6.0e-05       22.5%     58.40
  WD 5:  Seg 18   432-470      6.52  383.80  0.00042       22.5%     50.22
  WD 6:  Seg 22   475-516      6.94  401.36  0.00024       27.5%     56.60
  WD 7:  Seg 26   520-559      8.81  478.50  2.2e-05       40.0%     55.97
  WD 8:  Seg 29   562-594      3.01  239.16  0.03663       12.5%     38.70

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  263-301    -S-----RTLQVLQDHSDE---VWFLQFSH-NGKYLASSSSDRSAIIWE
   WD 2  302-346    VDLNGRISLKHRLLDHEQP---ISLVSWSP-DDSQLLTCGVEEAVRRWD
   WD 3  350-388    -G-----ACLHVYEKAGLG---LVSCGWFP-DGKHILAGVTDKSICMWD
   WD 4  392-430    -N-----ELEGWKGQRTLK---ISDLEITN-DGKKIISICRDTAILLLD
   WD 5  432-470    -E-----LNVDKLIEEDQI---ITSFQLSR-DNKFLLVNLLNQEIHLWN
   WD 6  475-516    -A-----EIVTAYTGHKRTRFVIRSCFGGL-DQAFIASGSEDSLVYIWQ
   WD 7  520-559    -G-----EVVGALEGHSGS---VNCVSWNPANPHMLASASDDHTIRIWG
   WD 8  562-594    -G-----LDLDVVNSKSNE---QHSSSNGN-GNGVHCSNRGTS------

   WD40 Template    TG-----ECLRTLSGHTSG---VTSVSFSP-DGKRLVSGSEDGTIKVWD