Input parameters:

  Query = CmaCh03G015080 (Len=1746)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh03G015080, Len=1746):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPELPGYYYDVQKNRYFPLKGPIPGSSRTSSSSSSAPHHKRASKPTPIVDSCSKADLRAVKLIQARELYGDVIASSKGK 80  
WD40-rpts                                                                                      

Query       81 WNFKEKFQNLLASKPVVWKYRGTDRMGDSALQEIPINVHTLEGQMESTVLLTGNISGSLSFFGVGEGDQHIERGVNCCPE 160 
WD40-rpts                                                                                      

Query      161 LVWPLAGENQMVREVPGDIWQLSGASLQMSSNISSIKLFKKRFPLVHDDVSDIQHALISTLGSDSSGGSVYVLNLVEPLD 240 
WD40-rpts                                            (__________________WD 1__________________)

Query      241 FNRSIPVIRRRIHEVASFNCSIWTADCESSGGRAVIGTNMGAASVDMETSRISWILHGKSDIFALQLIHSENVVLCGLRN 320 
WD40-rpts              (_________________WD 2________________)(_________________WD 3___________

Query      321 GMIVTIDTRERQGVCKRLVRHRIPYLPVDRDSRTSSQQWYKVRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVA 400 
WD40-rpts      ______)(_________________WD 4________________)     (__________________WD 5______

Query      401 SGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAGRVPREQNGYLGCGDHSSGAWLGSQGGLHYLPQTLLILRPSLP 480 
WD40-rpts      ___________)   (__________________WD 6_________________)                        

Query      481 LGDPFFMASSEVEISSSASPFGCVLRDHNRRREPNVTATHVARFRNNLKTLVMDRLNDCITITPNRNQNHNPNPVIPNFR 560 
WD40-rpts                                                                                      

Query      561 GPRTNHDSAPRRSNPCQTLSTIINHPQNNNNNNNPQIRTTPTPETGTDKNHSSKLASSLVQIWEKRLNVSSSNVGLNANA 640 
WD40-rpts                                                                                      

Query      641 NANATPSVCSVKQETEQEQEQACSLEAGDFSDERYDAGLGSEDGFADWHSSRTSSSSPPSSTQSQISDARERERVRVVDI 720 
WD40-rpts                                                                                      

Query      721 IRRLTLTAAKPPHSSWVEDNDHSSESSSNPTLILRYQVEPKCLSHILYSPRIRGRQAFADLLLQIERDRQRELEALVERR 800 
WD40-rpts                                                                                      

Query      801 AVSKFPQRGRIQSLLRLKILQRGMALEDEQKRPKFVITPRANHRAYTISHLRERFSGAGENGARSPIGEMLDNNDDDKNQ 880 
WD40-rpts                                                                                      

Query      881 LDTDAHTHATNANDNDNDNDNDKDSNNQQVVGINPIPEDFNEEEIEEQEPVQEPVPEPEVDPPSSEGRWQDRPNLNLDSQ 960 
WD40-rpts                                                                                      

Query      961 DSINGWEAEDHSEAAEESYDENYLGTSYDWFADISRPRSYWEDRRKSWYQQMLDSNSANEEIRQLIERKTVSNFLSSEFR 1040
WD40-rpts                                                                                      

Query     1041 ERMDKLMVSRLERQTQQEEEYDDGAEEEEEEEEEEEEELWCFSEGHTQPESSDNEEEEEEEDRDERSLISSAPYQEASDD 1120
WD40-rpts                                                                                      

Query     1121 LDQSASPLQFPSPSILSSWSYQLDNEMGEDSNRGASTSSPQPFQPQFSSNTQRSSPVSTTHHPSIFTYSIISHLTFLHSP 1200
WD40-rpts                                                                                      

Query     1201 SFLSLFASLNPNWIVVWIRILSPLRSALLCPFHQSRFPSFPLSPTMAKDRERRMYVGVIFNYAAELKLFLSALLLLCALA 1280
WD40-rpts                                                                                      

Query     1281 TILQFLPSRFTLSISDLRSCSTTQDSPSSSSSSSLSATLHSSIPLPSPHPSTSLPTDQLLPNGILRRVFRPYGAAAYNFI 1360
WD40-rpts                                                                                      

Query     1361 TMGAYRGGVDNFAVVGLASKPLHVFGHPTYQCQWIPLLHPSNPINASAFKILPDWGYGRVYTVVVVNCTFSHPVNADNQG 1440
WD40-rpts                                                                                      

Query     1441 GKLLLYASTSGGGDRNFNLTDTIEVLTESPGGMNASLFTSSPKYDYLYCGSSLYGNLSPQRVREWLAYHIRLFGIRSHFV 1520
WD40-rpts                                                                                      

Query     1521 IHDAGGVHEEVLQVLKPWMELGYVTLQDIREEERFDGYYHNQFMVVNDCLHRYKFMAKWMFFFDIDEFIYVPPKSTIKSV 1600
WD40-rpts                                                                                      

Query     1601 LDSLSDYAQFTIEQMPMNSKTCLTEDAGRTYRKWGFEKLVYKDVKRGIRRDRKYAVQPRRVFATGVHMSENVAGKTTHKT 1680
WD40-rpts                                                                                      

Query     1681 EGKIKYFHYHGTIAHRREPCRSLSNLTQLTLDDTPFLLDTTMRLVAPAVKRFELKMIGSRLQATRQ 1746
WD40-rpts                                                                        

6 WD40-repeats found in QUERY=CmaCh03G015080 (Len=1746):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   199-240      3.26  249.12  0.02702       10.0%      0.93
  WD 2:  Seg  7   249-287      4.14  285.56  0.00880       15.0%     38.09
  WD 3:  Seg 10   288-327      7.23  413.22  0.00017       12.5%     50.57
  WD 4:  Seg 14   328-366      4.97  319.92  0.00304       12.5%     28.17
  WD 5:  Seg 16   372-412      6.68  390.58  0.00034       25.0%     47.22
  WD 6:  Seg 20   416-456      3.07  241.57  0.03403       10.0%      6.45

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  199-240    FKKRFPLVHDDVSDIQ--HALISTLGSDS--SGGSVYVLNLVEPLD
   WD 2  249-287    -RRRIHEVASFNCSIW--T--ADCESSGG--RAVIGTNMGAASVDM
   WD 3  288-327    ETSRISWILHGKSDIF--A--LQLIHSEN--VVLCGLRNGMIVTID
   WD 4  328-366    TRERQGVCKRLVR-HR--I--PYLPVDRD--SRTSSQQWYKVRLYD
   WD 5  372-412    -RGAVQTYDGHANSHTRIQ--LGVDPTET--FVASGGEDCNFRLWN
   WD 6  416-456    -GKLIFEDKFVDAVPS--T--ICWRRAGRVPREQNGYLGCGDHSSG

   WD40 Template    TGECLRTLSGHTSGVT--S--VSFSPDGK--RLVSGSEDGTIKVWD