Input parameters:

  Query = CsaV3_4G008220 (Len=442)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G008220, Len=442):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIHIYNWWTSSAFQCL 80  
WD40-rpts                                 (___________________WD 1__________________)  (_______

Query       81 TVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQA 160 
WD40-rpts      __________WD 2________________)   (_________________WD 3________________)       

Query      161 KPRENATEHILHQFLAHTDSVTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240 
WD40-rpts             (__________________WD 4_________________)   (________________WD 5________

Query      241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHEAAVVSIVIVNEGKHLISAAE 320 
WD40-rpts      ________)(________________WD 6_______________)   (_________________WD 7_________

Query      321 DGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQCVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGA 400 
WD40-rpts      _______)   (___________________WD 8___________________)                         

Query      401 AGSDVSRAIEMLESAIAVYEKMLELILKEAKASYNQREETQG 442 
WD40-rpts                                                

8 WD40-repeats found in QUERY=CsaV3_4G008220 (Len=442):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    28-70       7.02  404.62  0.00022       17.5%     52.24
  WD 2:  Seg  8    73-111      7.15  409.98  0.00019       20.0%     55.60
  WD 3:  Seg 12   115-153     10.14  533.58  4.0e-06       40.0%     55.47
  WD 4:  Seg 16   168-208      7.52  425.34  0.00012       32.5%     55.84
  WD 5:  Seg 20   212-249      7.12  408.57  0.00019       20.0%     58.79
  WD 6:  Seg 24   250-286      5.46  340.02  0.00163        7.5%     36.11
  WD 7:  Seg 28   290-328      9.93  524.69  5.3e-06       35.0%     54.22
  WD 8:  Seg 32   332-375      7.33  417.47  0.00015       10.0%     49.96

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-70     -GTHLASFNSSRSPRRGI--TRAGKSFI-----AVSHICPVTASGSIHIYN
   WD 2   73-111    -TSSAFQCLTVPEPVAPL--TATPDGFY-----LFA----GGLSGYIHILS
   WD 3  115-153    -GDVLNSLPAHKKPVSCL--KLSADGSL-----LIS----GGDDGTIVVMP
   WD 4  168-208    -EHILHQFLAHTDSVTSIYSGMGISSTQ-----IVS----CSLDGRCKLWN
   WD 5  212-249    -GTILHTV-VFPCAIFSV--VLEPSETE-----FFA----AGSDGLVYKGS
   WD 6  250-286    LG---HNNKRRRGTDYEL--IPQISNDL-----VYR----RSLRHKNKHLT
   WD 7  290-328    -SELIPWSTKHEAAVVSI--VIVNEGKH-----LIS----AAEDGSIWVWE
   WD 8  332-375    -GQVIMALENEMGSISDL--VMATERSHGKEQCVKT----DSHGGAMEISE

   WD40 Template    TGECLRTLSGHTSGVTSV--SFSPDGKR-----LVS----GSEDGTIKVWD