Input parameters:

  Query = CsaV3_3G043180 (Len=320)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G043180, Len=320):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEINLADIPFDLDFHPSDQLVAAGVIGGNLHLYRYDANALPQKLFKVRAHAKSCRAVRFINDGRAILTGSSDHSILSTDV 80  
WD40-rpts      (______________WD 1______________)      (_________________WD 2________________) 

Query       81 ETGSVIARLEDAHDEAVSKLINITSETIASGDDNGAIKVWDTRQRSCCSSFKAHEDYISDMTYLSDSTKLLATSGDGSLS 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWNLRRNKLHARSEFSEEELLSVVTMKNGRKVICGSQNGTLLLYSWGFFQDCSDRFVDASQNPVNALLKLDEDRVIVASE 240 
WD40-rpts      __)   (_________________WD 5________________)(___________________WD 6___________

Query      241 SGLISLVGILPNRVIQPIAEHSDYPVERLAFSHDRKFLGSISHDYMIKLWDMDLLQSSGNAPTTTVEASASVNSFTFTDD 320 
WD40-rpts      _______)   (_________________WD 7_________________)                             

7 WD40-repeats found in QUERY=CsaV3_3G043180 (Len=320):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       7.16  410.44  0.00018       10.0%     44.07
  WD 2:  Seg  4    41-79       8.84  479.65  2.1e-05       27.5%     56.41
  WD 3:  Seg  8    83-121      9.57  510.10  8.3e-06       27.5%     54.75
  WD 4:  Seg 12   125-163      9.94  525.34  5.2e-06       22.5%     59.42
  WD 5:  Seg 16   167-205      9.00  486.51  1.7e-05       17.5%     55.73
  WD 6:  Seg 20   206-248      7.18  411.43  0.00018       20.0%     53.90
  WD 7:  Seg 24   252-291      8.50  465.80  3.3e-05       35.0%     59.70

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     ---------MEINLAD-IPFDLDFHPSDQLVAAGVIGGNLHLYR
   WD 2   41-79     -P---QKLFKVRAHAK-SCRAVRFINDGRAILTGSSDHSILSTD
   WD 3   83-121    -G---SVIARLEDAHD-EAVSKLINITSETIASGDDNGAIKVWD
   WD 4  125-163    -R---SCCSSFKAHED-YISDMTYLSDSTKLLATSGDGSLSVWN
   WD 5  167-205    -N---KLHARSEFSEE-ELLSVVTMKNGRKVICGSQNGTLLLYS
   WD 6  206-248    WGFFQDCSDRFVDASQ-NPVNALLKLDEDRVIVASESGLISLVG
   WD 7  252-291    -N---RVIQPIAEHSDYPVERLAFSHDRKFLGSISHDYMIKLWD

   WD40 Template    TG---ECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD