WDRR: WD40 Repeat Recognition
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| JobID: 97XFO1659499825 Submitted: 2022-08-03 12:10:25 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79752162 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh11G006230 (Len=1751) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh11G006230, Len=1751): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNRGALQSSVMQQQIMGSENPSWWHMVNSGSIRTSSTQQSSPNNNSPNFLFPHSSLPLPSNFLYDFSQDKDQLPESWSHL 80
WD40-rpts
Query 81 LLGGLVGEDDQKGCMGGMFQGKKLEDWEEEILNTNTTTHHQQHVDVKKENSVHATSCAYVYGHGGSGGGVDADNYPSLPP 160
WD40-rpts
Query 161 KQNWSSIIPVSSPQSCVTSFSSNMLDFSNNNTNSPPDSRPRHLPPDRSSECNSNAAGGGAVKKARVQSSSNQTTFKVRKE 240
WD40-rpts
Query 241 KLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHSQIEALSLPYLGNTSASTRQLQQHSDEEGKKDLRSRGLCLVPVS 320
WD40-rpts
Query 321 CTLQVGSDNGADYWAPAFGGGGFRQAGRGGTVLALYYIHQNSCRQSESSSCVRLTFGHILFSSTNSTTIVTGAMVATGAI 400
WD40-rpts
Query 401 TASSILHHISAFISEILAQSELRKRLLSVVYGIISLSDEIALKPLELAAEALENAIFTDNSSIKSSSLRCAEELLLSVPE 480
WD40-rpts
Query 481 NACSSFLLSLIYGLNHQNLNSALNLLHLFLSDPSLARSEIAPILFEELFLRHFLPIIHWFHQQRFQILTFFPSNLINNTT 560
WD40-rpts
Query 561 EHSIGDEPEVFPCTKSLSKLSIDQTLKLKELESNYERVLDKNCRVFAEHFKRVLERKDNGGSIAIPMVKLLDKNEKWKEM 640
WD40-rpts
Query 641 EQIAKQKLRTEQLCFPNGRYNPIWIEEEQTLEVDFTNKSKSASPPCVRSQVFGPFNLISEQESSSSSRTFSIFKSTAQDQ 720
WD40-rpts
Query 721 DDSSEIFSLGSETEFEENDHEKTLFDSGQPKPKNQKLKQTITQSLELDYAMENSRSASPESGEKHITPPKDFVCPITCNI 800
WD40-rpts
Query 801 FYDPVTIETGQTYERSAIQEWLDRGNLTCPITGQKLQNTQLPKTNYVLKRLIASWLEENPNFVLDKALDEAESVAVLTSP 880
WD40-rpts
Query 881 VSFISQASIDRSMEMRRAITNLCTSEVLEEAETAVLCVERFWLEENVEGNVQHMLLKPSVINGLVEILVNSVDLQVLRAA 960
WD40-rpts
Query 961 IFLLSELGFKGDIVIETLTRVESDVNCIVTLFKRGVVEAVLLIYQLGLSSQTLQEMDIVGSLLNVVKKKEEDVNKMHLSH 1040
WD40-rpts
Query 1041 KSAAVLLLRKILGSKEGSPTVVAVLAENAIESILGSLKAKQVEERIAAVGILLRCIQEDWKCRNIIADKADLALILSSFT 1120
WD40-rpts
Query 1121 KVSNGEQFEIIMFLSELVKLNRRTSNEKILRNIKDGSECSTMHSLLTYLQTAHRDQCPVVAGLLLQLDILVWVEPLKMSI 1200
WD40-rpts
Query 1201 YREEAMDVLISCLRDSDFPTAQISAAETIMSLQGRFSTSGQPLARYFLLERAGLTKNHRKPIGTENISDALGEVELTREE 1280
WD40-rpts
Query 1281 DKATDEWERKMAFVLVNHDFGLLLEPLAKGLKSKCAALFSACFVSATWLSHMLGTLPDTGILEAARIFLLDHFLSIFTMT 1360
WD40-rpts
Query 1361 TDIEEKALALLAINSFVHEPEGLQYLSSDMKNIMRGLKEFRRSTPLAFDMLKVLCEGQDSSTELWSHHELFKVDCSRNGE 1440
WD40-rpts (______________________________WD 1______________________________) (________
Query 1441 VLSIAHCKDRIISGHSDGTMKVWSVKGTNLHLLQEIQEHSKGVTSLAVAESEEKLYSGSLDKTIKVWSLGSDIVQCIQVH 1520
WD40-rpts ______WD 2_____________) (_________________WD 3________________)(___________
Query 1521 DVKEQIHNLVVSKSVACFIPHGVGIRVYSWAGESKLLNSSKHVKCLNLMHGKLYCGCHDSSIQEVDLATGTVSYIHSGSR 1600
WD40-rpts ________WD 4__________________)(_______________WD 5______________) (____
Query 1601 KLLGKANPIHALQVYDEQLFSASTALDGAAVKIRCRSNYGVIGSLSTAMDVRTMAVGSNLTYLGGKGGVVEIWSREKHNK 1680
WD40-rpts _____________WD 6_________________) (_______________WD 7_______________) (_
Query 1681 IDALQIGRNCKVVCMSLNEREDVLVIGTSDGRIQVECFFYFRSLLLYQKLKSPQSYHHSLGTMTEKERMAP 1751
WD40-rpts ________________WD 8________________)
 8 WD40-repeats found in QUERY=CmaCh11G006230 (Len=1751): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 10 1361-1426 5.76 352.80 0.00109 25.0% 31.97 WD 2: Seg 13 1432-1464 6.29 374.35 0.00056 30.0% 44.98 WD 3: Seg 16 1470-1508 9.48 506.43 9.3e-06 40.0% 51.45 WD 4: Seg 20 1509-1551 4.91 317.48 0.00327 7.5% 42.95 WD 5: Seg 24 1552-1586 4.03 281.14 0.01008 17.5% 45.41 WD 6: Seg 29 1596-1635 5.72 350.75 0.00117 17.5% 44.41 WD 7: Seg 32 1639-1674 4.05 281.81 0.00988 15.0% 50.81 WD 8: Seg 36 1679-1717 6.79 395.10 0.00029 25.0% 46.41Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1361-1426 TDIEEKALALLAINSFVHEPEGL---QYLSSDMKNIMRGLKEFRRSTPLAFDMLKVLCEGQDS-STELWS WD 2 1432-1464 --------------------------KVDC--------SRNGEVLSIAHCKD--RIISGHSDG-TMKVWS WD 3 1470-1508 -L------------------HLL---QEIQ--------EHSKGVTSLAVAESEEKLYSGSLDK-TIKVWS WD 4 1509-1551 LG------------------SDIVQCIQVH--------DVKEQIHNLVVSKSVACFIPHGVGI-RVYSWA WD 5 1552-1586 ---------------------GE---SKLL--------NSSKHVKCLNL--MHGKLYCGCHDS-SIQEVD WD 6 1596-1635 -H------------------SGS---RKLL--------GKANPIHALQVYDEQLFSASTALDGAAVKIRC WD 7 1639-1674 -Y------------------GVI---GSLS--------TAMD-VRTMAVGSNL--TYLGGKGG-VVEIWS WD 8 1679-1717 -N------------------KID---ALQI--------GRNCKVVCMSLNEREDVLVIGTSDG-RIQVEC WD40 Template TG------------------ECL---RTLS--------GHTSGVTSVSFSPDGKRLVSGSEDG-TIKVWD |
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