Input parameters:

  Query = gi_1023945172_gb_KZV12380.1_ (Len=375)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_1023945172_gb_KZV12380.1_, Len=375):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRYHMQGFSGYGVQYSPFFDNRLAVAAGSNFGLVGNGKLFILEIDRSGRIVQVNSFLTQDCLFDLAWNESHENQVLVAQ 80  
WD40-rpts      (________________WD 1_______________)       (____________________WD 2___________

Query       81 GDGTLRLFDTTFKEFPIAIFKEHEREVFSCNWNLVNRQNFLSSSWDGSIKIWSPLRKQSLMTLTPRPLEITKMVDPLNAI 160 
WD40-rpts      ________)    (_________________WD 3_________________)                           

Query      161 ILKKKSFTGISKNRNCVYQAQFSPHDQNLVLSCSGNSYASLFDIRLPSGKNQNNFLVHSGLEALTCDFNKYRPYVVATGG 240 
WD40-rpts         (_________________WD 4_________________)     (__________________WD 5_________

Query      241 VDNAIRIWDIRMLNKNESATIKRTVPGQPHNSSCINEIPNAHGLAIRKVTWSPHHSNILMSASYDMTCRIWRDLSNDGAK 320 
WD40-rpts      ________)                       (_________________WD 6_________________)        

Query      321 ETYKTNSTDATKGSIFNFTQHSEFVFGADWSLWGKPGYVASTAWDGNLFVWNGLG 375 
WD40-rpts                 (__________________WD 7_________________)   

7 WD40-repeats found in QUERY=gi_1023945172_gb_KZV12380.1_ (Len=375):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       3.50  259.04  0.01993       15.0%     33.23
  WD 2:  Seg  5    45-89       5.59  345.58  0.00137       12.5%     49.31
  WD 3:  Seg  9    94-133      7.45  422.28  0.00013       25.0%     49.48
  WD 4:  Seg 15   164-203      6.21  371.20  0.00062       22.5%     48.45
  WD 5:  Seg 19   209-249      5.61  346.32  0.00134       20.0%     51.41
  WD 6:  Seg 23   273-312      6.33  376.28  0.00053       25.0%     43.52
  WD 7:  Seg 26   332-372      6.33  376.34  0.00053       25.0%     51.12

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     ----ML----RYHMQGF-SGYGVQYSPFFDN--RLAVAAGSNFGLVGN
   WD 2   45-89     IDRSGRIVQVNSFLTQD-CLFDLAWNESHEN--QVLVAQGDGTLRLFD
   WD 3   94-133    -EFPIA----IFKEHER-EVFSCNWNLVNRQ--NFLSSSWDGSIKIWS
   WD 4  164-203    -KKSFT----GISKNRN-CVYQAQFSPHDQN--LVLSCSGNSYASLFD
   WD 5  209-249    -GKNQN----NFLVHSGLEALTCDFNKYRPY--VVATGGVDNAIRIWD
   WD 6  273-312    -SCINE----IPNAHGL-AIRKVTWSPHHSN--ILMSASYDMTCRIWR
   WD 7  332-372    -KGSIF----NFTQHSE-FVFGADWSL-WGKPGYVASTAWDGNLFVWN

   WD40 Template    TGECLR----TLSGHTS-GVTSVSFSP-DGK--RLVSGSEDGTIKVWD