Input parameters:

  Query = CmaCh13G009070 (Len=383)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh13G009070, Len=383):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGIMEYHQTFHNSDTYFDRSYSSSSSSYSSPCLTTFKGHSSYISSLTLAGKFLYSGSSDKEIRSWKRNPIQNCEENQEEF 80  
WD40-rpts                                   (________________WD 1_______________)             (

Query       81 QNNMVTTGHGAVKSLVVSSDKLYSAHQDHKIRVWKISNDFDQQRKYTRLATLPTLGDRTARLLMPNNQVQIRRHKKCTWV 160 
WD40-rpts      _______________WD 2_______________)(_________________WD 3_________________)(____

Query      161 HHVDTVSALALSNDESLLYSVSWDRTLKIWRTSDFKCLESVAGAHDDAINAVALAGDGDVYTGSTDKRIKVWRKNPDGKR 240 
WD40-rpts      ___________WD 4_______________)   (_________________WD 5________________)       

Query      241 HFLVQTLEKHSSGINALALAGDGSVLFSGACDRSVLVWEKEEGGGFMELVGVLRGHSKAILCLAVVLDLVCSGSADKTIR 320 
WD40-rpts      (_________________WD 6________________)       (________________WD 7_____________

Query      321 IWKRVVAGSGNYVCLTVLEGHNGPVKCLAAAVDRYNQNDRSLMVYSGGLDCDIKAWQICVPCV 383 
WD40-rpts      __)        (____________________WD 8____________________)      

8 WD40-repeats found in QUERY=CmaCh13G009070 (Len=383):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    30-66       7.90  441.00  7.1e-05       40.0%     52.17
  WD 2:  Seg  7    80-115      5.54  343.42  0.00146       30.0%     51.22
  WD 3:  Seg 11   116-155      4.78  312.06  0.00387       12.5%     19.54
  WD 4:  Seg 14   156-191      8.70  474.10  2.5e-05       30.0%     52.43
  WD 5:  Seg 18   195-233      7.58  427.66  0.00011       35.0%     52.07
  WD 6:  Seg 22   241-279      9.68  514.53  7.2e-06       32.5%     57.04
  WD 7:  Seg 26   287-323      7.33  417.58  0.00015       30.0%     53.42
  WD 8:  Seg 30   332-377      7.46  422.89  0.00012       32.5%     53.11

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   30-66     -SPCLTTFKG-HSSYISSLTLA---------GKFLYSGSSDKEIRSWK
   WD 2   80-115    -FQNNMVTTG-H-GAVKSLVVSSD-------K--LYSAHQDHKIRVWK
   WD 3  116-155    ISNDFDQQRK-YTRLATLPTLGDR-------TARLLMPNNQVQIRRHK
   WD 4  156-191    ----KCTWVH-HVDTVSALALSND-------ESLLYSVSWDRTLKIWR
   WD 5  195-233    -FKCLESVAGAHDDAINAVALAGD-------GD-VYTGSTDKRIKVWR
   WD 6  241-279    -HFLVQTLEK-HSSGINALALAGD-------GSVLFSGACDRSVLVWE
   WD 7  287-323    -MELVGVLRG-HSKAILCLAVVLD---------LVCSGSADKTIRIWK
   WD 8  332-377    -YVCLTVLEG-HNGPVKCLAAAVDRYNQNDRSLMVYSGGLDCDIKAWQ

   WD40 Template    TGECLRTLSG-HTSGVTSVSFSPD-------GKRLVSGSEDGTIKVWD