WDRR: WD40 Repeat Recognition
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| JobID: 93TMH1659500940 Submitted: 2022-08-03 12:29:00 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79750375 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh13G010320 (Len=1210) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh13G010320, Len=1210): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MARIFEYFVVCGIGPEIRTLDGNKGFHGFSHLYLASLLDQYPPPNHSLYPPPPPQLATCVLPAGVEFFSSGFDSCDASTF 80
WD40-rpts
Query 81 PRSYPIVLTEGDGSKIYVSCIAFRDPVSEDIAEAYRLPPNSYADKCICIVSRSPSFHVLKDALEELFALCFSSSGSSKPL 160
WD40-rpts
Query 161 WDIIAFMISNVPLPTPGEERILFGIENCLLSVQAPPKDGLPHADISFQPLMQCLDLENLIKLFTAVLLERRILLRSNKYS 240
WD40-rpts
Query 241 LLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEDIPPIPEP 320
WD40-rpts
Query 321 ELGSLRSELMKLLYPNVVSIDQMRSDLRSSCEQYPRGICKPWGEDHDLQLRLIFLKFFASLLSGYRNFIENSETDAFNTQ 400
WD40-rpts
Query 401 AFLKKRSRSTNQPEDPMITQFLESQGFLDYLERCIGSDESNNNILDKLQDAIGRGQNPLSILPSSLAEPEIITISDPDMG 480
WD40-rpts
Query 481 SSGSGAKYTYDRFPSNVRTEEQEEKRQQILAAVRGAFEYSGKHNPNSPSMLMGRDPKAPSLSPMERAAERERMVLDIKVK 560
WD40-rpts
Query 561 LQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSR 640
WD40-rpts
Query 641 NDILTIRDALEVSGEIYKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMEQSSNKSANYTSLVSAQLIIMASHMAGL 720
WD40-rpts (_______________________WD 1_______________
Query 721 GLPDIDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSAVKSQSTSAHATPSPHPKDGSDQNQQPAEASVVG 800
WD40-rpts ________) (____________________WD 2___________________) (________________WD
Query 801 RSWVQSMFSRDTSARINLGRSGRWTSDVPTESGTSQRQDLPSAGQKKVQSNIRILRGHSGAVTALHCVSKREVWDLVGDR 880
WD40-rpts 3________________) (___________________WD 4
Query 881 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTGPVRAINSDRGKVVSGSDDHSVIVWDKQTTQLLEELKGHDAQVSC 960
WD40-rpts __________________) (________________WD 5_______________) (_______________
Query 961 VRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVICMEYDDSTGILAAGGRDTIANIWDIRAGRQMHKLLGHTKW 1040
WD40-rpts _WD 6________________) (_________________WD 7________________) (____________
Query 1041 IRSIRMVGDTIVTGSDDWTARLWSVSRGACDAVLACHAGPILAVEYSTLDKGIITGSTDGLLRFWENEDGGIRCVKNVTI 1120
WD40-rpts ____WD 8_______________) (_________________WD 9________________) (________
Query 1121 HSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMAGWQLYRTPQKTAAMVRCASSDLERKRICTGGRNGL 1200
WD40-rpts ________WD10_______________) (_________________WD11____________
Query 1201 LRLWEATINI 1210
WD40-rpts ____)
 11 WD40-repeats found in QUERY=CmaCh13G010320 (Len=1210): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 12 678-729 4.80 312.81 0.00378 17.5% 36.18 WD 2: Seg 15 733-777 3.84 273.39 0.01281 10.0% 27.06 WD 3: Seg 18 781-818 4.82 313.63 0.00369 5.0% 29.38 WD 4: Seg 23 857-899 6.50 383.20 0.00043 25.0% 42.29 WD 5: Seg 27 905-941 8.06 447.77 5.7e-05 40.0% 49.74 WD 6: Seg 31 945-982 8.38 460.99 3.8e-05 35.0% 54.45 WD 7: Seg 35 986-1024 8.91 482.78 1.9e-05 22.5% 56.35 WD 8: Seg 39 1028-1064 7.79 436.28 8.2e-05 32.5% 50.14 WD 9: Seg 43 1068-1106 9.84 521.08 5.9e-06 30.0% 53.01 WD10: Seg 47 1112-1148 6.32 375.62 0.00054 17.5% 48.59 WD11: Seg 50 1167-1205 7.08 407.11 0.00020 22.5% 48.89Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 678-729 -WEELRF---WEGYFDYLMEQSSNKSANYT------SLVSAQLIIMASHMAGLGLPDIDAWY WD 2 733-777 -TIAEKN---SIGYKQLIKLRGFLSHIQQLRISYWGLSA-------------VKSQSTSAHA WD 3 781-818 -PHPKDG---SDQNQQPAEASVVGRSW-VQ------SMF-------------SRDTSARINL WD 4 857-899 GHSGAVTALHCVSKREVWDLVGDREDAGFF------ISG-------------STDCLVKIWD WD 5 905-941 -SELRAT---LKGHTGPVRAI--NSDRGKV------VSG-------------SDDHSVIVWD WD 6 945-982 -TQLLEE---LKGHDAQVSCVRML-SGERV------LTA-------------AHDGTVKMWD WD 7 986-1024 -DTCVAT---VGRCSSAVICMEYDDSTGIL------AAG-------------GRDTIANIWD WD 8 1028-1064 -GRQMHK---LLGHTKWIRSIRMVGD--TI------VTG-------------SDDWTARLWS WD 9 1068-1106 -GACDAV---LACHAGPILAVEYSTLDKGI------ITG-------------STDGLLRFWE WD10 1112-1148 -IRCVKN---VTIHSAAI--LSISAGEHWL------GIG-------------AADNSMSLFH WD11 1167-1205 -WQLYRT---PQKTAAMVRCASSDLERKRI------CTG-------------GRNGLLRLWE WD40 Template TGECLRT---LSGHTSGVTSVSFSPDGKRL------VSG-------------SEDGTIKVWD |
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