Input parameters:

  Query = CsaV3_3G037260 (Len=350)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G037260, Len=350):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MELLDGRFELKEIAKLEGHTDRVWSLAWNPATGVGGIPLVFASCSGDKTVRIWEQSPSSGSWNCKAVLEETHTRTVRSCA 80  
WD40-rpts               (____________________WD 1___________________)          (_______________

Query       81 WSPNGKLLATASFDATTAIWENTGGDYECVSTLEGHENEIKSVAWNASGSLLATCSRDRTVWIWEVLPGNEYECVSVLQG 160 
WD40-rpts      _WD 2_______________)(___________________WD 3___________________)      (________

Query      161 HTQDVKMVQWHPTMDLLFSCSYDNTVKVWAGDDDNDDWHCVQTLDESNNGHSSTVWALSFNATGDKMVSCSDDLTLKIWE 240 
WD40-rpts      _________WD 4________________)             (________________WD 5_______________)

Query      241 TDETKLHSEAGYSPWRHTCTLSGYHDRTIFSVHWSRNGIIASGAADDAIRLFVENQEKGIDRSSFQLLFKKEKAHSMDVN 320 
WD40-rpts      (________________________WD 6_______________________)(_______________________WD 

Query      321 SVQWSPGEKVLLASASDDGTIRIWELVPIS 350 
WD40-rpts      7_______________________)     

7 WD40-repeats found in QUERY=CsaV3_3G037260 (Len=350):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-54       7.85  438.84  7.6e-05       30.0%     56.55
  WD 2:  Seg  7    65-101      8.82  479.20  2.2e-05       32.5%     45.14
  WD 3:  Seg 10   102-145      9.93  524.70  5.3e-06       35.0%     54.91
  WD 4:  Seg 14   152-190      9.71  515.64  7.0e-06       42.5%     51.17
  WD 5:  Seg 19   204-240      9.49  506.81  9.2e-06       35.0%     43.92
  WD 6:  Seg 22   241-293      5.95  360.35  0.00087       37.5%     57.18
  WD 7:  Seg 26   294-345      8.13  450.39  5.3e-05       37.5%     54.05

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-54     -L----K-------------EIAKLEG-HTDRVWSLAWNPATGVGGIPLVFASCSGDKTVRIWE
   WD 2   65-101    KA----V----------------LEET-HTRTVRSCAWSPNGK------LLATASFDATTAIWE
   WD 3  102-145    NTGGDYE-------------CVSTLEG-HENEIKSVAWNASGS------LLATCSRDRTVWIWE
   WD 4  152-190    -Y----E-------------CVSVLQG-HTQDVKMVQWHPTMD------LLFSCSYDNTVKVWA
   WD 5  204-240    --------------------LDESNNG-HSSTVWALSFNATGD------KMVSCSDDLTLKIWE
   WD 6  241-293    TD----ETKLHSEAGYSPWRHTCTLSGYHDRTIFSVHWSRNG-------IIASGAADDAIRLFV
   WD 7  294-345    EN----Q--EKGIDRSSFQLLFKKEKA-HSMDVNSVQWSPGEK-----VLLASASDDGTIRIWE

   WD40 Template    TG----E-------------CLRTLSG-HTSGVTSVSFSPDGK------RLVSGSEDGTIKVWD