Input parameters:

  Query = CsaV3_5G025110 (Len=319)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G025110, Len=319):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESNRVLLDFQIPIQDAVSRLQFAPLSNNLLVSSWDSILRLYDADNCTLRLEVASEAALLDCCFQNESLALSAASDGCIR 80  
WD40-rpts         (_________________WD 1_________________)(_________________WD 2_______________

Query       81 RYELQSGIFETVGKHGDSVTHIRYSDQTCQIVTAGLDGKIQLWDTRNKKSPSFVRNMGSDVVSMSLSGFNLIVASGACVY 160 
WD40-rpts      __)  (_________________WD 3________________)   (_________________WD 4___________

Query      161 LLDLRNLEKSIQLKDSYMKVPVACVSSVPYREGVAVGSVDGRVALDIACLDQTDDIRYIFRCHPKSKAAKNHLESVNDIV 240 
WD40-rpts      _____)(__________________WD 5_________________)               (_________________

Query      241 FNPIHHGAFATGDNAGFVSIWDFQRKTRILELPRFPNSVASLSYNCGGELLAVASSCTYQEANEREEPPQVFLHNVKEK 319 
WD40-rpts      WD 6_________________)   (_________________WD 7________________)               

7 WD40-repeats found in QUERY=CsaV3_5G025110 (Len=319):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       8.38  460.87  3.8e-05       20.0%     57.30
  WD 2:  Seg  5    44-83       6.78  394.57  0.00030       20.0%     54.73
  WD 3:  Seg  9    86-124      9.31  499.08  1.2e-05       27.5%     53.55
  WD 4:  Seg 13   128-166      8.23  454.57  4.6e-05       17.5%     42.52
  WD 5:  Seg 17   167-207      7.59  428.06  0.00011       22.5%     53.21
  WD 6:  Seg 22   223-262      8.08  448.36  5.6e-05       20.0%     46.29
  WD 7:  Seg 25   266-304      8.16  451.59  5.1e-05       17.5%     52.47

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     NRVL-LD-FQIPIQDAVSRLQFAPLSN-NLLVSSWDSILRLYD
   WD 2   44-83     ADNCTLR-LEVASEAALLDCCFQNESL--ALSAASDGCIRRYE
   WD 3   86-124    -SGI-FE-TVGKHGDSVTHIRYSDQTC-QIVTAGLDGKIQLWD
   WD 4  128-166    -KKS-PS-FVRNMGSDVVSMSLSGFNL-IVASGACVYLLDLRN
   WD 5  167-207    LEKS-IQLKDSYMKVPVACVSSVPYRE-GVAVGSVDGRVALDI
   WD 6  223-262    -HPK-SK-AAKNHLESVNDIVFNPIHHGAFATGDNAGFVSIWD
   WD 7  266-304    -KTR-IL-ELPRFPNSVASLSYNCGGE-LLAVASSCTYQEANE

   WD40 Template    TGEC-LR-TLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD