Input parameters:

  Query = BmWD002 (Len=209)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (BmWD002, Len=209):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPKEDPETTALKKELTDLISKVKADQEKLADAKLAEKCSDLGDVPKIRFVTKKTLKGHLNKVNSVHYSGDSRHCVTGSLD 80  
WD40-rpts                                              (_____________________WD 1______________

Query       81 GKLIIWDTWSGNKVQIIPLRSAWVMSVAFAPSGNFVACGGMDNMCTVYDVNNRDATGAAKMVRELAGYEGFLSSCRFLDD 160 
WD40-rpts      ______)   (_________________WD 2________________)         (________________WD 3_

Query      161 THILTGSGDMKICVWDLEAGKREMEFDAHAGDVVSISLSPDYHTDKVRI 209 
WD40-rpts      _______________)                                 

3 WD40-repeats found in QUERY=BmWD002 (Len=209):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    41-87       9.92  524.27  5.3e-06       42.5%     51.80
  WD 2:  Seg  8    91-129      9.75  517.59  6.6e-06       27.5%     54.85
  WD 3:  Seg 12   139-176      8.06  447.61  5.8e-05       32.5%     54.83

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   41-87     LGDVPKIRFVTKKTLKGHLNKVNSVHYSGDSRHCVTGSLDGKLIIWD
   WD 2   91-129    -GN-------KVQIIPLRSAWVMSVAFAPSGNFVACGGMDNMCTVYD
   WD 3  139-176    -AK-------MVRELAGYEGFLSSCRFLDDT-HILTGSGDMKICVWD

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD