WDRR: WD40 Repeat Recognition
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| JobID: 8YYIB1659503272 Submitted: 2022-08-03 13:07:52 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79748509 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh15G001110 (Len=2751) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh15G001110, Len=2751): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MASQGQGSIDPAVLDDIIRRLTEVRSSRPGKQVQLSENEIKQLCVASREIFIQQPNLLELEAPIKICGDIHGQYSDLLRL 80
WD40-rpts
Query 81 FEYGGFPPSANYLFLGDYVDRGKQSLETICLLLAYKIKFPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDC 160
WD40-rpts
Query 161 FNCLPVAALIDDKILCMHGGLSPDLTNLDQIRSLGRPTPIPDTGLLCDLLWSDPCRDVKGWGMNDRGVSYTFGPDKVEEF 240
WD40-rpts
Query 241 LSKHDLDLVCRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAEKKANNISMTDYKFKR 320
WD40-rpts
Query 321 LMKLVCALKTSEFGLADYAFDSFSLDKVIVEDWKASTHYCISEVKKNGAAFSSLSFFFFYFDGEGECGGSTFVVYNRFDN 400
WD40-rpts
Query 401 TYIDFFPLWATDWFNHLLKIPTSPSFLLESALFMNFLHVSSLFSGIIWSQIYDIDIWDCLFGFSGNTQLDFLCRKGCGLS 480
WD40-rpts
Query 481 VMVIATPFLPLSAPYPAPNTISAAAALSSRSLSLPTKSKPPIPFILSQLGTIRVVLLRFFFSSETVVQPLTRAVGEIAPP 560
WD40-rpts
Query 561 LLIQILKVGLRFILRKAKDAATAANDAHDAFIPPHQYHHRTDSKGRIFSFFFLPTQMPIFAHMYLDENKKLILAILDNQN 640
WD40-rpts
Query 641 LGKLAECAHKVDVSWSLEAGGVYGCRYQAQLQKNLMYLAAIADAQPQAPAMPPQMAPHPAMQQGGYYMQHPQAAMMAQQS 720
WD40-rpts
Query 721 GLFPPKVPLQFGNPHQLQDQQQQLHQQHQQAMQGQMGLRPIGGANNGMHHPHHTEATLGGASAGGPARSSGQTDGRGGGK 800
WD40-rpts
Query 801 QDSADVGGTGADAQGNSAGGRGGGGDGEEAKWSKEPKVVDCFSLSRISRLQIQLWQRTFHDRKNGIPLIKPAKQFNINAS 880
WD40-rpts
Query 881 ASFVLQRRVMNSGDPSMALLAASAGDTVKLFDVSVHSNDLGDPCTLSYTPSPGYQVNSVKWNHTNLVVASAGDDKKISLW 960
WD40-rpts (____________________WD 1___________________
Query 961 RKNGQSMGTIPITGNDSGDNIEESIFSISFSSKVSRYMCTGGSGHVVRIWDLQRKRCIKWLRGHTNTITGAMYNCKDEHL 1040
WD40-rpts ) (________________________WD 2____________
Query 1041 ASISLSGDLILHNLASGARATELKDPNEQVLRVLDYSRISRHLLVTAGDDGTVLLWDTTGRNPKVSWQKQHSAPTAGIGF 1120
WD40-rpts ____________) (__________________WD 3_________________) (_________________W
Query 1121 SPSNDKTLASVGMDKKLYTYDSGSRRPSSFIAYEAPFSSMAFRDDGLILAAGTSNGRVVFYDVRGKPEPYIVLRAFSSSE 1200
WD40-rpts D 4_________________)(__________________WD 5_________________)
Query 1201 AVTSLSWQRLKPVIVNEGNCTAEVALLGGAIEDSILMPDPLPSVTTSTIPMSTTISSSRNPGRSGPTFEASLAETSSTFT 1280
WD40-rpts
Query 1281 TAEETPHRSHLWPLGSLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDDQNGLKKDHPFDKKPLSMLFPSSNRR 1360
WD40-rpts
Query 1361 FSSTEDGAGDHPIFHWKSSSSKQDDSRSSSGQLGSSPTSTLNSKSEDSSITPPEAWGGEKLSDKFAQLRQPMTLPSRFGM 1440
WD40-rpts
Query 1441 LASSSSSSSQTPSSLISGLQDPSSSVSQSSITSLTNLNFSYPNLRTKDATSQEVSLSIPEHLSTTAASLSLGTRGTIGLS 1520
WD40-rpts
Query 1521 NPDSPWTTTMTLPRRFSTYAERLSTTSSFSDGLPVGSPKTKKMGSETREEVLNNLSKFDTLSVTESGILPAMNGGSLQPQ 1600
WD40-rpts
Query 1601 KALQPDAQQGNSFTLKLFQRTLEETLDSFQRSIHDDMRNLHIEILRQFHMQEIEMSSVTSSILENQAELIKERAFGHFVA 1680
WD40-rpts
Query 1681 LRAAPEASMQTFPPTYGGDRGRGYQTLESPSDPQPQPSSNWKGMFSVSSYTQYFNVDTDTVMNRLISSLYPIGGDFSSKI 1760
WD40-rpts
Query 1761 DANPDLYGLVWVTTTLVFVLAALGNCATFLMQKQSDHGAAWSFDVSYVNVAAGSVYGYAIVVPTAFYFSLQYLGSNSNLI 1840
WD40-rpts
Query 1841 RFWCLWGYSLFIFILASFPLLIPVEILRWFIILLSGAASASFVTLNLRSYIDGNDLSVLIVAAFFLQMALAIFIKVWNDS 1920
WD40-rpts
Query 1921 LLIGVVSSLPLNLCDESQKRSTENDVDEPEPEPKQQQPGSGGLTLRLWDQPLNLTETRNPLRSSLVVAVLKFNEESPNVR 2000
WD40-rpts
Query 2001 QSSVKVVGTAVVTRSDGRLALGRLGALCEQIKELNSQEFEVILVSSGAVGIGRQRLRYRQLVNSSFADLQKPQVDLDGKA 2080
WD40-rpts
Query 2081 CAAVGQNSLMALYDTLFSQLDVTSAQLLVTDNDFRDKGFRSQLSDTVKSLLSLKVIPIFNENDAVSTRKAPYEDSSGIFW 2160
WD40-rpts
Query 2161 DNDSLAALLALELKADLLVLLSDVDGLYSGPPSDPHSKLIHTYVKERHQGEITFGDKSRVGRGGMTAKVKAATGAAYAGI 2240
WD40-rpts
Query 2241 PVIITSGYAPANILKVLKGDRIGTLFHQDAHLWEPQKDVGARDMAVAARESSRRLQAISSQERRKILLDIADALEANEKL 2320
WD40-rpts
Query 2321 ISAENEADVAEAQQTGYEKALVNSDTNCICEQISSLANSIRTLANMEDPIGHVLKKTEVSDGLILEKTSSPLGVLLIVFE 2400
WD40-rpts
Query 2401 SRPDALVQIASLAIRSGNGLLLKGGKEARRSNAILHKVITEAIPDSVGGTIIGLVTSREEIPDLLKLDDVIDLVIPRGSN 2480
WD40-rpts (______________________________________WD 6______________________
Query 2481 KLVSQIKNSTKIPVLGHADGICHVYVDKSADLEMAKRIVLDAKIDYPAACNAMETLLVHQDLVHTGGLNELVVNLRIEGV 2560
WD40-rpts _______________)
Query 2561 ILNGGPRSSSLLNIPEAGTFHHEYNSLACTLEIVDDVFAAIDHIHQHGSGHTDCIVTEDHEVAEVFIRQVDSAAVFHNAS 2640
WD40-rpts
Query 2641 TRFSDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGSGQTVDGDKGVVYTHRDLRRTLLPGLEIQSLVVAYSVD 2720
WD40-rpts
Query 2721 LPSENNRNHHVRLSVFKQKQQEQGICSVKNG 2751
WD40-rpts
 6 WD40-repeats found in QUERY=CmaCh15G001110 (Len=2751): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 23 917-961 4.32 293.27 0.00693 20.0% 30.72 WD 2: Seg 30 1000-1053 4.98 320.55 0.00298 27.5% 41.07 WD 3: Seg 34 1057-1097 4.65 306.88 0.00455 30.0% 32.60 WD 4: Seg 37 1102-1141 5.35 335.51 0.00187 22.5% 19.43 WD 5: Seg 39 1142-1182 4.91 317.50 0.00327 22.5% 25.42 WD 6: Seg 68 2416-2496 3.20 246.81 0.02900 22.5% 12.48Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 917-961 SN-----DLGDPCTLSYT-P---------S-------------------PGYQVNSVKWNH-T--------------NLV--VASAG--------DDKKISLWR WD 2 1000-1053 TGGSGHVVR-----IWDL-QRKRCIKWLRG-------------------HTNTITGAMYNC-K--------------DEH--LASIS--------LSGDLILHN WD 3 1057-1097 -G-----AR-----ATEL-K---------D-------------------PNEQVLRVLDYS-R--------------ISRHLLVTAG--------DDGTVLLWD WD 4 1102-1141 -N-----PK-----VSWQ-K---------Q-------------------HSAPTAGIGFSPSN--------------DKT--LASVG--------MDKKLYTYD WD 5 1142-1182 SG-----SR-----RPSSFI---------A-------------------YEAPFSSMAFRD-D--------------GLI--LAAGT--------SNGRVVFYD WD 6 2416-2496 SG-----NG-----LLLK-G---------GKEARRSNAILHKVITEAIPDSVGGTIIGLVT-SREEIPDLLKLDDVIDLV--IPRGSNKLVSQIKNSTKIPVLG WD40 Template TG-----EC-----LRTL-S---------G-------------------HTSGVTSVSFSP-D--------------GKR--LVSGS--------EDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |