Input parameters:

  Query = AtTTG1 (Len=248)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AtTTG1, Len=248):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDNSADSSRSTAVTYDSYYAMASSRSSSGHRIAVGSDYNNRIDISDSDSMTVKNSHYTKMSSRRSSGDASSGDRWINDSS 80  
WD40-rpts                                                                                      

Query       81 TVISVNNSKTSCATSDWNDVKRGTCSIDTTCTIWDIKSVVTIAHDKVHDIAWGARVASVSADGSVRIDRDKHSTIIYSDT 160 
WD40-rpts           (____________WD 1____________)                             (_______________

Query      161 RAWNKDRYMATIMDSNKVVIDIRSTMVARHASVNAIAWASCKHICSGGDDTAIWTVAGNGIDMSVYSAGSINWSSSDWIG 240 
WD40-rpts      _WD 2_______________)(______________WD 3______________)                         

Query      241 IAANKMRV 248 
WD40-rpts              

3 WD40-repeats found in QUERY=AtTTG1 (Len=248):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    86-115      3.99  279.34  0.01066       15.0%     17.37
  WD 2:  Seg 10   145-181      5.09  324.81  0.00261       15.0%     34.28
  WD 3:  Seg 14   182-215      4.40  296.36  0.00630       20.0%     21.55

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   86-115    -------NNSKTSCATSDWNDVKRGTCSIDTTCTIWD
   WD 2  145-181    VRIDRDKHSTIIYSDTRAWNKDRYMATIMDSNKVVID
   WD 3  182-215    IRSTMVARHASVNAIAWAS-CKHICSGGDDTAI--WT

   WD40 Template    CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD