WDRR: WD40 Repeat Recognition
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| JobID: 8FZOC1659515076 Submitted: 2022-08-03 16:24:36 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79734669 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G031890 (Len=1112) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G031890, Len=1112): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MACIKGVNRSASVAIAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDKDLPVIGDSPSSERFNRLSWGKNGSGSE 80
WD40-rpts (______________WD 1_____________)
Query 81 QFSLGFIAGGLVDGNIDIWNPLALIRPEAGETPLVGHLTRHKGPVRGLEFNTITPNLLASGADDGEICIWDLANPSQPIH 160
WD40-rpts (_______________________WD 2______________________)
Query 161 FPPLKGSGSAAQGEISFLSWNSKVQHILASTSYNGATVVWDLKKQKPVISFSDSTRRRCSVLQWNPDLATQLVVASDDDH 240
WD40-rpts (_________________WD 3_________________) (___________________WD 4____________
Query 241 SPSLRLWDMRNIMTPVKEFVGHTRGVIAMSWCPTDTSYLLTCAKDNRTICWDTISGDIVCELPASTNWNFDVHWYPRIPG 320
WD40-rpts _______) (_________________WD 5_________________) (_________________WD 6___
Query 321 VISASSFDGKIGLYNIESCSRYGVGDNDFSTVSLRAPKWYKRPVGASFGFGGKVVSFQPKTPAAGASAGASEVYVHELVM 400
WD40-rpts ______________)
Query 401 EHSLVTRSSEFEAAIQNGERSSLRVLCEQKSKESDLEDDRETWGFLKVMFEDDGTARTKLLSHLGFSVSTESQDPQEEIS 480
WD40-rpts
Query 481 QDVNALHLNDTAADNIGYGDGREATLFPSDNGEDFFNNLPSPKADTPLSISGDNHAAEETVAAEEPQVEDGVEDNGDASF 560
WD40-rpts
Query 561 ADGVQRALVVGDYKGAVGLCVSANKMADALVIAHVGGGSLWENTRDQYLKMSRSPYLKIVSAMVNNDLLSLVNTRPLKFW 640
WD40-rpts
Query 641 KETLALLCSFAQKDEWTVLCDTLASKLMVAGYTLPATLCYICAGNIDKTVEIWSKCLSAEREGKSYVDLLQDLMEKTIVL 720
WD40-rpts
Query 721 ALATGQKRFSVTLCKLVEKYAEILASQGQLTTALEYIKLLGSEELTPELVILRDRISLSTESDKNDKASNIEYSQQPSEN 800
WD40-rpts
Query 801 MYGSEATKHYYQESASAQFHQNMPTTTYNDNYSQTAYGARGYTAPTPYQPAPQPNLFVPSQAPQAPETNFSAPPGQPAPR 880
WD40-rpts
Query 881 PFVPATPSALRNMEKYQQPPTLGSQLYPGIANPTYQPIPAASVGPVPSHMDSVPGHKMPQVVAPAPPSRGFMPVPNPGAV 960
WD40-rpts
Query 961 QLPGMGLVQPPSPTQSAPTQPAVMPPAPPPTVQTADTSNVPAHQKPVVATLTRLFNETSEALGGARANPGKKREIEDNSR 1040
WD40-rpts
Query 1041 KMGALFSKLNSGDISKNAADKLGQLCQALDTGDYGRALQIQVLLTTSEWDECSFWLATLKRMIKTRQSMRLS 1112
WD40-rpts
 6 WD40-repeats found in QUERY=CsaV3_3G031890 (Len=1112): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-35 2.83 231.64 0.04604 15.0% 40.84 WD 2: Seg 8 101-151 5.98 361.65 0.00083 32.5% 44.03 WD 3: Seg 11 162-201 4.22 288.96 0.00792 22.5% 41.70 WD 4: Seg 14 205-248 3.08 241.93 0.03367 25.0% 52.94 WD 5: Seg 18 253-292 6.71 391.69 0.00033 30.0% 52.75 WD 6: Seg 22 296-335 5.17 328.28 0.00234 22.5% 51.94Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-35 CIKGV-----------------NR-SASVAIAP-DA-PY-MAAGTMAG---AVDLSF WD 2 101-151 PLALIRPEAGETPLVGHLTRHKGP-VRGLEFNTITP-NL-LASGADDG---EICIWD WD 3 162-201 -PPLKG----------SGSAAQGE-ISFLSWNS-KV-QHILASTSYNG---ATVVWD WD 4 205-248 -QKPVI----------SFSDSTRRRCSVLQWNP-DLATQ-LVVASDDDHSPSLRLWD WD 5 253-292 -MTPVK----------EFVGHTRG-VIAMSWCPTDT-SY-LLTCAKDN---RTICWD WD 6 296-335 -GDIVC----------ELPASTNW-NFDVHWYP-RIPGV-ISASSFDG---KIGLYN WD40 Template TGECLR----------TLSGHTSG-VTSVSFSP-DG-KR-LVSGSEDG---TIKVWD |
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