Input parameters:

  Query = CmaCh04G009280 (Len=436)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G009280, Len=436):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEHLFEAYSNTSDEDNEEDEPQPKRLALPSSTSKRPEHSQFQPMFRPSHCPDSTSEPQKEIMVPGRYISKRERALMSSAP 80  
WD40-rpts                                                                                 (____

Query       81 VSRAPESFLNPSVQFSTVGSLSDSDLPRDILSLLRSRAKNYLQQGLMPKRMSVSLDCHTKAVNAVQWSPSHAHLLASAAM 160 
WD40-rpts      _____________WD 1_________________)             (_________________WD 2__________

Query      161 DYTICIWNIWSTEQKLAFKSSIHNAAVKDVEWSQQGLSILSCGYDCSSRLIDVEKGTEIGVFKEDQGVAVVKFHPNDPSL 240 
WD40-rpts      _______)     (_________________WD 3________________)   (_________________WD 4___

Query      241 FLSGGVKGSLRMWDVRIGKVVNKYNRRLGPILDVEFTPNVNQFISSSDVSSSNSSESSVIVWDVTREVPLSYQVYMEAYT 320 
WD40-rpts      _____________)   (____________________WD 5____________________)(________________

Query      321 CPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYGSHVVSGFPIKCDFSLDGKQIISGSSDGSIYFYDYKSSLLI 400 
WD40-rpts      ___WD 6__________________)            (_______________WD 7______________)   (___

Query      401 HKLKASEQACTDVAIHPTLPNVIASCSWNGNICVFQ 436 
WD40-rpts      ______________WD 8_________________)

8 WD40-repeats found in QUERY=CmaCh04G009280 (Len=436):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    76-115      7.83  437.92  7.8e-05       15.0%     26.23
  WD 2:  Seg  5   129-168      8.20  453.49  4.8e-05       32.5%     55.22
  WD 3:  Seg  9   174-212      8.38  460.78  3.8e-05       22.5%     55.87
  WD 4:  Seg 13   216-254      8.38  460.85  3.8e-05       17.5%     56.38
  WD 5:  Seg 17   258-303      7.97  443.79  6.5e-05       22.5%     48.14
  WD 6:  Seg 21   304-346      7.09  407.56  0.00020       10.0%     56.09
  WD 7:  Seg 26   359-393      6.72  392.26  0.00032       32.5%     46.04
  WD 8:  Seg 30   397-436      7.03  405.24  0.00021       22.5%     53.21

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   76-115    MSS---APVSRAPESFLNPSVQFSTV-G-SLSD-------SDLPRDILSLLR
   WD 2  129-168    -KR---MSVSLDCHTKAVNAVQWSPS-HAHLLA-------SAAMDYTICIWN
   WD 3  174-212    -QK---LAFKSSIHNAAVKDVEWSQQ-G-LSIL-------SCGYDCSSRLID
   WD 4  216-254    -GT---EIGVFKEDQGVAVVKFHPND-P-SLFL-------SGGVKGSLRMWD
   WD 5  258-303    -GK---VVNKYNRRLGPILDVEFTPN-V-NQFISSSDVSSSNSSESSVIVWD
   WD 6  304-346    VTREVPLSYQVYMEAYTCPCVRCHPF-D-PVFI-------AQSNGDYIAIFS
   WD 7  359-393    YGS---HVV-----SGFPIKCDFSLD-G-KQII-------SGSSDGSIYFYD
   WD 8  397-436    -SL---LIHKLKASEQACTDVAIHPTLP-NVIA-------SCSWNGNICVFQ

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPD-G-KRLV-------SGSEDGTIKVWD