Input parameters:

  Query = CsaV3_5G026770 (Len=475)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G026770, Len=475):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSPQARKAGLNLPAGMAERSLRLETFSGSFRAISNLSSPSKTSTCSDRFIPCRSSSRLHTFGLIEKASPVKEGGNEAYS 80  
WD40-rpts      (__________WD 1__________)  (________________WD 2________________)              

Query       81 RLLKTELFGSDFGSFSPAGSQGQGSPMSPSKNMLRFKTDHSTPNSPYSPSIFSQDAGYSSEISTPPKPPRKVPKTPHKVL 160 
WD40-rpts           (______________WD 3______________)                                         

Query      161 DAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNCKVTKLCDLGPNDGVCSVQWTREGSYISIGTNLGQVQIWDGSQ 240 
WD40-rpts       (______________WD 4_____________)(___________________WD 5__________________)   

Query      241 CKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDLRVASEFVNKLVGHKSEVCGLKWSNDDRELASGGNDNQLLVWN 320 
WD40-rpts      (________________WD 6_______________)    (_________________WD 7________________)

Query      321 QHSQQPVLRLTEHTAAVKAIAWSPHQSGLLASGGGTADRCIRFWNTANGHQLESVDTGSQVCNLSWSKNVNELVSTHGYS 400 
WD40-rpts         (__________________WD 8__________________)   (_________________WD 9__________

Query      401 QNQIMVWKYPSMAKVATLTGHTMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKTQTPVRDTGLWSLGRTQIR 475 
WD40-rpts      _______)   (_________________WD10________________)                         

10 WD40-repeats found in QUERY=CsaV3_5G026770 (Len=475):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-26       3.97  278.57  0.01092       10.0%     -9.18
  WD 2:  Seg  2    29-66       2.88  233.64  0.04333       17.5%     -3.36
  WD 3:  Seg  3    86-119      4.73  310.07  0.00412       20.0%     -7.55
  WD 4:  Seg  5   162-194      4.42  297.11  0.00615        2.5%     42.70
  WD 5:  Seg  8   195-237      8.07  447.84  5.7e-05       30.0%     53.57
  WD 6:  Seg 12   241-277      6.73  392.76  0.00032       27.5%     56.49
  WD 7:  Seg 16   282-320      9.32  499.77  1.1e-05       35.0%     55.33
  WD 8:  Seg 20   324-365      7.77  435.69  8.4e-05       27.5%     47.11
  WD 9:  Seg 24   369-408      5.93  359.66  0.00088       32.5%     50.48
  WD10:  Seg 28   412-450      9.98  527.03  4.9e-06       37.5%     56.65

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-26     -----------------MDSPQARKAGLNLPA---GMAERSLRLET
   WD 2   29-66     -GSFRAISN---LSSPSKTSTC-SDRFIPCRS---SSRLHTFGLIE
   WD 3   86-119    ------ELF---GSDFGSFSPAGSQGQGSPMS---PSKNMLRFKTD
   WD 4  162-194    -------AP---SLQDDFYLNLVDWSSQNVLA---VGLGTCVYLWS
   WD 5  195-237    ASNCKVTKLCDLGPNDGVCSVQWTREGSYISI---GTNLGQVQIWD
   WD 6  241-277    -CKKVRTMG---GHQTRTGVLAW--NSRILAS---GSRDRNILQHD
   WD 7  282-320    -SEFVNKLV---GHKSEVCGLKWSNDDRELAS---GGNDNQLLVWN
   WD 8  324-365    -QQPVLRLT---EHTAAVKAIAWSPHQSGLLASGGGTADRCIRFWN
   WD 9  369-408    -GHQLESVD---TG-SQVCNLSWSKNVNELVS-THGYSQNQIMVWK
   WD10  412-450    -MAKVATLT---GHTMRVLYLAMSPDGQTIVT---GAGDETLRFWN

   WD40 Template    TGECLRTLS---GHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD