Input parameters:

  Query = CmaCh01G018650 (Len=1175)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G018650, Len=1175):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVLVVASSSVDSGIGCWDLHTGAEQLCYKSCASPAHGLVCVGERFLACSQLRDPAATSGSVLYWSWFKPQVEVKSFPAEP 80  
WD40-rpts                           (___________________WD 1___________________)(______________

Query       81 IMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHYRAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRE 160 
WD40-rpts      ____WD 2_________________)   (_________________WD 3________________)            

Query      161 SKHLYEHSFTGHNLPVTDIVIGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240 
WD40-rpts        (__________________WD 4_________________)   (________________WD 5_____________

Query      241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNNIIRVLKHSKGPVNNLLIVQH 320 
WD40-rpts      ___)            (_________________WD 6________________)   (__________________WD 

Query      321 QLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDTGVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATG 400 
WD40-rpts      7__________________)   (________________________WD 8_______________________)    

Query      401 MELERLKREYGKSMQMQQQWRKLWLQCVSLLYYDARAFLLHRPLIFNFNALNRAFINRVFIGRQCRSYKPMASSMSSSPN 480 
WD40-rpts                                                                  (________________WD 

Query      481 TNKDVSEVAEQLGIITAPYGSWKSPITADVVTGASKRLGGTAVDGNGRLIWLESRPYESGRGVLVKESEKPGDEPCDITP 560 
WD40-rpts      9_______________)                                                               

Query      561 KEFSVRNTTQEYGGGAFAVAGDFVVFSNYKDQRLYKQSLNSDSPPQALTPDYGGPSVSYADGVFDSRFNRLITIQEDGRQ 640 
WD40-rpts                                                                                      

Query      641 SSLNPINTIVSVELDGKDINEPKVLVGGNDFYAFPRVDPKGERIAWIEWGHPNMPWDKSELWVGYLSENGSACSNSFFTG 720 
WD40-rpts                        (_________________WD10________________)                       

Query      721 DSEVSKRVRVAGGDPKLVESPTEPKWSAQGELFFITDRQSGFWNLYKWFEANDEVAPLYSLNAEFSRPLWVFGTNSYEFL 800 
WD40-rpts                                                                                      

Query      801 KNSVGRNIIVCTYRQHGRSYLGVLDEAQSSLSLLDIPFTDINNIALGRDCIYVEGSTALDPSSIAKVTLNERILEIVHFT 880 
WD40-rpts                                                                                      

Query      881 IIWSSSPDILKFMSYFSLPEFIEFPTEVPGQTAFAYFYPPTNPIYQASQDEKPPLLLRSHGGPTAETRGILNPSIQYWTS 960 
WD40-rpts                                                                                      

Query      961 RGWGYVDVNYGGSTGYGREYRERLLRQWGIVDVNDCCSCARFLVAPPTVNSGKVDGERLCITGGSAGGYTTLAALAFRDT 1040
WD40-rpts                                                                                      

Query     1041 FKAGASLYGIADLSLLRADTHKFESHYIDNLVGNEKDYFERAPINFVEKFSCPIILFQGLEDKAVLPNQSRKIYHALKDK 1120
WD40-rpts                                                                                      

Query     1121 GLPVALVEYEGEEHGFRKAENIKFTLEQQMMFFARFVGRFQVADDINPIKIENFD 1175
WD40-rpts                                                             

10 WD40-repeats found in QUERY=CmaCh01G018650 (Len=1175):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-65       6.91  400.23  0.00025       12.5%     49.84
  WD 2:  Seg  7    66-106      8.57  468.83  3.0e-05       17.5%     57.61
  WD 3:  Seg 11   110-148     10.62  553.16  2.2e-06       42.5%     53.74
  WD 4:  Seg 15   163-203      7.55  426.61  0.00011       30.0%     43.78
  WD 5:  Seg 18   207-244      7.48  423.70  0.00012       22.5%     58.26
  WD 6:  Seg 22   257-295     10.10  531.96  4.2e-06       47.5%     47.78
  WD 7:  Seg 25   299-340      7.15  410.05  0.00019       12.5%     41.00
  WD 8:  Seg 29   344-396      6.24  372.43  0.00060       12.5%     41.75
  WD 9:  Seg 33   461-497      3.60  263.46  0.01740       20.0%     13.52
  WD10:  Seg 44   659-697      5.02  322.10  0.00284       17.5%     17.39

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-65     -GA-EQLCYKSCASP--------------AHGLVCVGERFLACSQL--RDP---AATSGSVLYWS
   WD 2   66-106    WFKPQVEVKSFPAEP--------------IMAL-----ASNNEGTY--IVG---GGFSGDIYLWE
   WD 3  110-148    -GR-LLMKWHAHYRA--------------VTCL-----EFSEDDSL--LIS---GSEDGCVRVWS
   WD 4  163-203    -HL-YEHSFTGHNLP--------------VTDI-----VIGYGGSNAIIIS---SSVDRTCKVWS
   WD 5  207-244    -GK-LLRNII-FPSI--------------IDAI-----ALDPGEHV--FYG---GGRDGKIYTAA
   WD 6  257-295    -LH-ILGSLSNQSKS--------------VTSL-----AYCSSGNL--LIS---GSEDGAIKVWD
   WD 7  299-340    -NN-IIRVLKHSKGP--------------VNNL-----LIVQHQLL--PTSQLNPTSQGSLRKHR
   WD 8  344-396    -PP-ALAKFGNSKDDDEDTGVIIGRSGPPMESM-----GFSPISSH--VMD---HQITELQQQGS
   WD 9  461-497    IG----RQCRSYKPM--------------ASSM-----SSSPNTNK--DVS---EVAEQLGIITA
   WD10  659-697    -IN-EPKVLVGGNDF--------------YAFP-----RVDPKGER--IAW---IEWGHPNMPWD

   WD40 Template    TGE-CLRTLSGHTSG--------------VTSV-----SFSPDGKR--LVS---GSEDGTIKVWD