Input parameters:

  Query = 2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=253)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (2AQ5_A_PDBID_CHAIN_SEQUENCE, Len=253):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH 80  
WD40-rpts            (_________________________WD 1_________________________) (________________

Query       81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 
WD40-rpts      _____WD 2____________________)          (_________________WD 3_________________)

Query      161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 
WD40-rpts         (__________________WD 4_________________)   (___________________WD 5_________

Query      241 RMSERQVALWDTK 253 
WD40-rpts      __________)  

5 WD40-repeats found in QUERY=2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=253):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-62       2.84  231.83  0.04577       15.0%     45.34
  WD 2:  Seg  5    64-110      8.30  457.68  4.2e-05       35.0%     51.11
  WD 3:  Seg  9   121-160      7.87  439.87  7.3e-05       40.0%     52.75
  WD 4:  Seg 13   164-204      8.02  445.96  6.1e-05       27.5%     55.25
  WD 5:  Seg 17   208-251      5.74  351.93  0.00112       25.0%     46.62

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-62     RSS------KFRHVFGQPAKADQCYEDVRVS--QTTWDSGFCA--VNP-KFMA-LICE---ASGGGAFLVL
   WD 2   64-110    LGKTGRVDKNVP----------------LVC--GHTAPVLDIA--WCPHNDNV-IASG---SEDCTVMVWE
   WD 3  121-160    -RE------PVI----------------TLE--GHTKRVGIVA--WHP-TAQNVLLSA---GCDNVILVWD
   WD 4  164-204    -GA------AVL----------------TLGPDVHPDTIYSVD--WSR-DGAL-ICTS---CRDKRVRVIE
   WD 5  208-251    -GT------VVA----------------EKD--RPHEGTRPVHAVFVS-EGKI-LTTGFSRMSERQVALWD

   WD40 Template    TGE------CLR----------------TLS--GHTSGVTSVS--FSP-DGKR-LVSG---SEDGTIKVWD