Input parameters:

  Query = CmaCh03G010850 (Len=661)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh03G010850, Len=661):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSSDGDADVFFDSEDYLPLEESLVTEEVDVSKSGYEIWMREPQSIKKRREYFLQEVGLKEFASSSSTRTQDSEIESSCS 80  
WD40-rpts      (_________________WD 1_________________)(_________________WD 2________________) 

Query       81 SGRMELERLTECSGAVSSSDYAPSCNVVDNDSVVHHNDMQSDEFSNEANEATSRPSSVSNSSFQRCQGEANVEACKDIDA 160 
WD40-rpts        (_______________WD 3_______________)   (_________________WD 4________________)

Query      161 RKKKILTWWKSLKNKAARLRAMEFSEESKSNPAKSESCRMKVCQNKKKFSEFSALYMRQQICAHKGLIWTMKFSPDGKYL 240 
WD40-rpts       (___________________WD 5__________________)          (_________________WD 6____

Query      241 ASGGEDGVVRIWRVTRTNASSEFLANDATREGKSSFSSKPLRFATVVIPAKVFQIDELPIQEFHGHSSDVLDIAWSTSNC 320 
WD40-rpts      ____________)    (_________________WD 7________________)(________________WD 8___

Query      321 LLSSSKDKTVRLWQVGSDQCLNVFHHKNYVTCIQFNPMDENYFVSGSIDGKIRIWGVLKQRVVDWADIRDAITAISYQPD 400 
WD40-rpts      _____________)(__________________WD 9__________________)  (_________________WD10

Query      401 GKGFAVGSITGTCRFYKTSGDDYINLDEQINIGGRNKASGKRITGIQFFRENSHRVMITSEDSKVRIFEGTKIVGQYKGL 480 
WD40-rpts      ________________)             (_________________WD11________________)   (_______

Query      481 SKSGSQMSASFTENGKHIVSVGEDSRVYMWNYDSVGLSSTNETKSQQSCEHFFSDGVSVAIPCPGTGTEPKCLGNSQSQL 560 
WD40-rpts      __________WD12________________)  (__________________WD13__________________)     

Query      561 SQRRDNQGDASGLECFSFSNWFSSNGLRRGSATWPEERLPLWDLPVAEDEHQDCHQKKLNGHNGDAHDQGSRLETWGLVI 640 
WD40-rpts         (_________________WD14_________________)         (__________________WD15_____

Query      641 VVAGSDGTIKTFHNYGLPIKF 661 
WD40-rpts      ____________)        

15 WD40-repeats found in QUERY=CmaCh03G010850 (Len=661):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       6.80  395.40  0.00029        2.5%     15.71
  WD 2:  Seg  4    41-79       7.06  406.44  0.00021       10.0%     42.39
  WD 3:  Seg  7    83-118      5.37  336.37  0.00182       17.5%     48.64
  WD 4:  Seg 11   122-160      5.66  348.32  0.00126       17.5%     28.48
  WD 5:  Seg 14   162-204      8.29  457.29  4.3e-05       22.5%     44.88
  WD 6:  Seg 18   215-253      9.36  501.42  1.1e-05       35.0%     54.63
  WD 7:  Seg 22   258-296      5.13  326.56  0.00247       15.0%     46.34
  WD 8:  Seg 26   297-334      7.73  434.15  8.8e-05       27.5%     53.77
  WD 9:  Seg 30   335-376      7.58  427.66  0.00011       37.5%     55.29
  WD10:  Seg 34   379-417      8.53  467.05  3.2e-05       25.0%     53.48
  WD11:  Seg 39   431-469      6.54  384.97  0.00040       15.0%     46.54
  WD12:  Seg 42   473-511      8.69  473.56  2.6e-05       25.0%     58.78
  WD13:  Seg 46   514-555      5.04  323.00  0.00276       15.0%     37.36
  WD14:  Seg 51   564-603      6.77  394.49  0.00030       25.0%     37.58
  WD15:  Seg 54   613-653      6.58  386.49  0.00038       25.0%     48.95

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     ML-SSD---GDADVFFDSE--DYLP-LEE-SLVTEE---VDV-SKSGYEIWM
   WD 2   41-79     -R-EPQ---SIKKRREYFL--QEVG-LKE-FASSSS---TRT-QDSEIESSC
   WD 3   83-118    -R-MEL---ERLTECSGAV--SSSD-YAP-SCNVVD---N----DSVVHHND
   WD 4  122-160    -D-EFS---NEANEATSRP--SSVS-NSS-FQRCQG---EAN-VEACKDIDA
   WD 5  162-204    KK-KILTWWKSLKNKAARL--RAME-FSE-ESKSNP---AKS-ESCRMKVCQ
   WD 6  215-253    -L-YMR---QQICAHKGLI--WTMK-FSP-DGKYLA---SGG-EDGVVRIWR
   WD 7  258-296    -N-ASS---EFLANDATRE--GKSS-FSS-KPLRFA---TVV-IPAKVFQID
   WD 8  297-334    -E-LPI---QEFHGHSSDV--LDIA-WST-SN-CLL---SSS-KDKTVRLWQ
   WD 9  335-376    VGSDQC---LNVFHHKNYV--TCIQ-FNPMDENYFV---SGS-IDGKIRIWG
   WD10  379-417    -K-QRV---VDWADIRDAI--TAIS-YQP-DGKGFA---VGS-ITGTCRFYK
   WD11  431-469    ---NIG---GRNKASGKRI--TGIQFFRE-NSHRVM---ITS-EDSKVRIFE
   WD12  473-511    -I-VGQ---YKGLSKSGSQ--MSAS-FTE-NGKHIV---SVG-EDSRVYMWN
   WD13  514-555    -S-VGL---SSTNETKSQQ--SCEH-FFS-DGVSVAIPCPGT-GTEPKCLGN
   WD14  564-603    R--DNQ---GDASGLECFS--FSNW-FSS-NGLRRG---SATWPEERLPLWD
   WD15  613-653    -D-CHQ---KKLNGHNGDAHDQGSR-LET-WGLVIV---VAG-SDGTIKTFH

   WD40 Template    TG-ECL---RTLSGHTSGV--TSVS-FSP-DGKRLV---SGS-EDGTIKVWD