Input parameters:

  Query = CsaV3_2G009090 (Len=891)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G009090, Len=891):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIRALASYREYTFAAYGSDIAVF 80  
WD40-rpts      (__________________WD 1__________________)   (_________________WD 2_____________

Query       81 KRAHQVANWSSHKAKVNLLLLFGDHILSVDINGNMFMWPFKGIEDSQSPVGQVILGRKFSPSCIMHPDTYLNKVILGSLE 160 
WD40-rpts      ___)(_______________WD 3______________)      (__________________WD 4____________

Query      161 GSLELWNISSKKKLFEFKGWNSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL 240 
WD40-rpts      ______)   (_________________WD 5________________)    (_________________WD 6_____

Query      241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVLMSSSADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 
WD40-rpts      ____________)(___________________WD 7__________________)       (________________

Query      321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKRAKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTP 400 
WD40-rpts      _WD 8________________)                                                          

Query      401 QAYVWRLQNFVLGEHILKPCPENPTPVKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKMEGGSCAHVGEVVGL 480 
WD40-rpts                   (_________________WD 9________________)          (_________________

Query      481 ACDSTNTHVISAGVHGDIKVWNFKERDLKSRWEIGSSVAKIVYHRVNGLLAVVTDDLVIRLFDIVALRLVRKFEGHTDRI 560 
WD40-rpts      WD10_________________)(__________________WD11_________________)   (_____________

Query      561 TDLSFSEDGKWLLSSSMDGSLRIWDVILARQIDALHVDASITAFSISPNMDILATTHVDQNGVYLWVNQLMFTGSSNVNT 640 
WD40-rpts      ____WD12________________)   (_________________WD13________________)             

Query      641 LASGMEFEDRVENPSNLPESKDLSCLSISTQQIPDLITLSLLPRSQWQSLINLDIIKVRNKPIEPPKKPEKAPFFLPSLP 720 
WD40-rpts                                                                                      

Query      721 SLSGEILFKPSESANKEGEEKRVDSEQQKKSDITSSQFLQLLESSSETKNFSAFTDYIKGLSPSTLDLELRMLQIIDDDD 800 
WD40-rpts                                                                                      

Query      801 HQEPANRPELISIELLLDYFIHEITYRNNFEFIQALIRLFLKIHGETVRCQLTLQEKAKKLLDVQTSVWQGLDKLFQSSR 880 
WD40-rpts                                                                                      

Query      881 CMITFLSNSQF 891 
WD40-rpts                 

13 WD40-repeats found in QUERY=CsaV3_2G009090 (Len=891):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       3.77  270.47  0.01402       20.0%     50.35
  WD 2:  Seg  5    46-84       3.03  239.82  0.03590        7.5%     28.19
  WD 3:  Seg  9    85-119      4.65  306.60  0.00459       17.5%     54.81
  WD 4:  Seg 13   126-167      5.50  341.79  0.00154       17.5%     44.05
  WD 5:  Seg 17   171-209      7.05  406.07  0.00021       25.0%     59.48
  WD 6:  Seg 21   214-253      6.47  382.12  0.00044       35.0%     56.37
  WD 7:  Seg 25   254-296      7.04  405.55  0.00021       27.5%     56.01
  WD 8:  Seg 29   304-342      7.66  430.94  9.7e-05       22.5%     52.47
  WD 9:  Seg 40   414-452      6.70  391.51  0.00033       20.0%     54.39
  WD10:  Seg 45   463-502      8.57  468.83  3.0e-05       20.0%     44.94
  WD11:  Seg 48   503-543      5.67  349.07  0.00123       20.0%     57.59
  WD12:  Seg 52   547-585     10.03  529.17  4.6e-06       45.0%     57.89
  WD13:  Seg 56   589-627      4.65  306.68  0.00458       22.5%     54.08

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     MGIFE---PYRAIGYITNSVPFSVQRLGT--E-TFVTVSVGKA-FQVYN
   WD 2   46-84     -L--N---LVLVGPQLPKKIRALASYREY--T-FAAYGSDIAV-FKRAH
   WD 3   85-119    --------QVANWSSHKAKVNLLLLF--G--D-HILSVDINGN-MFMWP
   WD 4  126-167    SQ--S---PVGQVILGRKFSPSCIMHPDTYLN-KVILGSLEGS-LELWN
   WD 5  171-209    -K--K---KLFEFKGWNSSVCCCVSSPAL--D-VVAIGCADGK-VHVHN
   WD 6  214-253    -Q--E---LFSFTHSTRGSVTALSFSSDG--QPLLASGGSSGV-ISIWN
   WD 7  254-296    LE--KRRLQSVIREAHDSSIVSLHFFANE--P-VLMSSSADNS-IKMWI
   WD 8  304-342    -P--R---LLRFRSGHSAPPLCIRFYANG--R-HILSAGQDRA-FRLFS
   WD 9  414-452    -E--H---ILKPCPENPTPVKACAISACG--N-FAFLGTEGGW-IERFN
   WD10  463-502    LD--K---MEGGSCAHVGEVVGLACDSTN--T-HVISAGVHGD-IKVWN
   WD11  503-543    FK--E--RDLKSRWEIGSSVAKIVYHRVN--G-LLAVVTDDLV-IRLFD
   WD12  547-585    -L--R---LVRKFEGHTDRITDLSFSEDG--K-WLLSSSMDGS-LRIWD
   WD13  589-627    -A--R---QIDALHVDAS-ITAFSISPNM--D-ILATTHVDQNGVYLWV

   WD40 Template    TG--E---CLRTLSGHTSGVTSVSFSPDG--K-RLVSGSEDGT-IKVWD